Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F14
         (284 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    38   3e-05
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   1.9  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   2.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   3.4  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   3.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   3.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    20   5.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    19   7.8  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    19   7.8  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    19   7.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    19   7.8  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 37.5 bits (83), Expect = 3e-05
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +1

Query: 235 LQDVYKIGGIGTVPVG 282
           LQDVYKIGGIGTVPVG
Sbjct: 1   LQDVYKIGGIGTVPVG 16


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 135 NQPSLEPWHFGGRLQHVISVPARNGYESDGS 43
           N PS EP +   R +     P   G E+D S
Sbjct: 373 NYPSYEPTYDNSRREGKQLNPLNKGTEADSS 403


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +1

Query: 37  NPAAVAFVPISGWH-GDNMLEPSTKMPWFKGWLV 135
           NP     + I GW+ G+ +L P    P  +  L+
Sbjct: 93  NPNLKTIISIGGWNAGNAILAPIAASPELRANLI 126


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 262 YRRFCIRLAGEDGEPCQWGEQTEGWRRG 179
           YR+FC R +    +  +   + E WR G
Sbjct: 545 YRKFCARYSAATQDLNKLLRKGEKWRWG 572


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 226 GEPCQWGEQTE 194
           GE C WGE  +
Sbjct: 519 GEVCMWGEYVD 529


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 173 IRHLPSAFPSLRSTNHPLNHGILVDGSNMLSPCQPEM 63
           + H+ + F + R   +  NHG+L    + LS C  E+
Sbjct: 285 VDHISNQFVAFRRKIYKWNHGLL--QGDPLSGCLCEL 319


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 88  CYLRASQKWVRKRRQPDC 35
           C L   + W RKRRQ  C
Sbjct: 712 CDLGWVEVWERKRRQYLC 729


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -2

Query: 226 GEPCQWGEQ 200
           GE C W EQ
Sbjct: 550 GEACLWSEQ 558


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 6/13 (46%), Positives = 6/13 (46%)
 Frame = -2

Query: 211 WGEQTEGWRRGPQ 173
           W E T  WR   Q
Sbjct: 547 WSEPTNTWREAEQ 559


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 6/19 (31%), Positives = 9/19 (47%)
 Frame = +1

Query: 37  NPAAVAFVPISGWHGDNML 93
           NP     + I GW+  N +
Sbjct: 93  NPDLKVLISIGGWNAGNAI 111


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 89  CWSRPPKCHGSRDGWLSVKKERLKVNALLRPST 187
           C +  P C    D     K  R+K ++ LRP++
Sbjct: 878 CENGKPTCWRECDKATCEKLFRMKKSSALRPAS 910


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.139    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,320
Number of Sequences: 336
Number of extensions: 1546
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4897022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)