Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F12
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    29   0.061
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    28   0.19 
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    25   1.7  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    23   4.0  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    23   5.3  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    23   5.3  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    23   5.3  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    23   7.0  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    23   7.0  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    22   9.3  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 29.5 bits (63), Expect = 0.061
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +2

Query: 53  RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHP 151
           RKK+  T  PKR MSA+M +    RE++K+++P
Sbjct: 9   RKKDPNT--PKRNMSAFMFFSIENREKMKTDNP 39


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 53  RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEI 172
           ++K +   +PKRP SAY L+  + R +IK E  G K  ++
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDV 146


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 74  DKPKRPMSAYMLWLNSAREQIKSE 145
           D PK+  +AY+L LN + E  KSE
Sbjct: 218 DMPKQVKNAYILILNVSLEYEKSE 241


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 181  FFGYFSDFQPRMFRLDLFSGTVEPQH 104
            +F   S  QP     + FSGTV P +
Sbjct: 1275 YFAKLSKKQPEWVSFNSFSGTVRPSN 1300


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 26  KNNFKIFAIRKKNKMTDKPKRPMSA 100
           +N   +F+ +  +  TDKP  P+S+
Sbjct: 444 ENKTPVFSFKAPSATTDKPSPPVSS 468


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 92  MSAYMLWLNSAREQIKSEHPGLK 160
           +  Y  +LN+AR QIK  H   K
Sbjct: 627 LQIYGSYLNNARSQIKPSHSDSK 649


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 166 SDFQPRMFRLDLFSGTVEPQH 104
           ++F+P+ +R+D   GT  P +
Sbjct: 252 TEFKPQSYRVDSLLGTARPYY 272


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 57  FLMAKILKLFLNWC 16
           F++   L LF+NWC
Sbjct: 497 FVLVASLTLFVNWC 510


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 91  YVSLYAVAQQCQRTDQV*TSWAES 162
           Y SL+   Q C   +Q+   W ES
Sbjct: 60  YQSLFEEFQDCFENEQLDVEWVES 83


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 44  FAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAK 178
           FA+ ++NK T++     S    ++   R+ ++   P   V E +K
Sbjct: 817 FALDEENKKTEEVTNLHSQMSRYVTKVRQALEQGEPLFAVVEKSK 861


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 803,706
Number of Sequences: 5004
Number of extensions: 12833
Number of successful extensions: 34
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)