Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F12
(184 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 38 0.001
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 38 0.001
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 38 0.002
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 36 0.006
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 36 0.006
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 32 0.056
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 30 0.30
02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355 28 1.2
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 28 1.2
11_03_0174 - 11235667-11235855,11236557-11236652,11236981-11237145 27 2.8
08_02_0849 - 21841470-21841883,21843748-21843813,21844768-218449... 27 2.8
01_01_0397 + 3034059-3034691 27 2.8
08_02_0689 + 20066140-20066505,20067930-20068217 26 4.9
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 26 4.9
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381... 26 4.9
12_02_1045 + 25656495-25656566,25657788-25657884,25658327-256584... 25 8.6
10_03_0014 - 7060587-7060730,7060813-7060981,7061444-7061613,706... 25 8.6
07_03_1263 + 25279899-25279985,25280263-25282372,25282700-252827... 25 8.6
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 25 8.6
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 56 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKG 184
K K +KPKRP SA+ +++ R+ K +HP +K V+ I K G
Sbjct: 27 KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAG 70
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2
Query: 56 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKK 181
KK K + PKR M+ +M + + R +K+ +P L TEIAKK
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKK 632
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 56 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKK 181
KK K + PKR ++ +M + + R +K+ +P L TEIAKK
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKK 591
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = +2
Query: 77 KPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKG 184
K KRP +A+ L+++ R++ K+EHP K V+ +AK+G
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEG 127
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +2
Query: 53 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAK 178
RKK + KPKRP SA+ ++++ R++ ++ HP K V ++K
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSK 66
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 32.3 bits (70), Expect = 0.056
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 74 DKPKRPMSAYMLWLNSAREQIKSEHPGL 157
++PK+P S+++L+ AR Q+ E PG+
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGV 439
Score = 31.5 bits (68), Expect = 0.099
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 53 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSE 145
+KK K KPK+PMSAY ++ R + +E
Sbjct: 276 KKKEKDPSKPKQPMSAYFVYTQQRRAALVAE 306
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 59 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIA 175
K K + K+P AY+LW +IK E P E++
Sbjct: 150 KGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVS 188
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 29.9 bits (64), Expect = 0.30
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 35 FKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK 160
FK RKK KPKR ++ + +L R Q +HP K
Sbjct: 10 FKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTK 51
>02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355
Length = 392
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 23 FKNNFKIFAIRKKNKMTDK--PKRPMSAYMLWLNSAREQIKSEHPGLK 160
F++ + R N++ K P R + +LWL E + S HPG +
Sbjct: 177 FRSQMQTIISRACNELGVKAVPSRRCVSLLLWLEERYETVYSRHPGFQ 224
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 77 KPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAK 178
+PK+P +A+ ++ R+ K E+P +K + E+ K
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGK 82
>11_03_0174 - 11235667-11235855,11236557-11236652,11236981-11237145
Length = 149
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/45 (22%), Positives = 25/45 (55%)
Frame = -2
Query: 168 SVTFSPGCSDLICSLALLSHSI*ADIGRFGLSVILFFFLMAKILK 34
S+T + C +C++A+ ++ +IG+ V ++ + + +LK
Sbjct: 101 SITVNASCHPEVCTIAIHGKNLDVEIGKRQFRVTIYESMSSSVLK 145
>08_02_0849 -
21841470-21841883,21843748-21843813,21844768-21844951,
21845427-21847468,21848544-21848870
Length = 1010
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 17 HQFKNNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTE 169
HQ K N IF RKK + +P + LWL S ++ S ++ +
Sbjct: 620 HQ-KENISIFE-RKKTSTSSEPAKETDPMDLWLTSNAQESNSSKDANRIND 668
>01_01_0397 + 3034059-3034691
Length = 210
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 77 KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKG 184
K R + A ++ + ++R+ IKS G+K + AK+G
Sbjct: 26 KLARTVPAILMRIGTSRKAIKSTMKGMKAMKAAKRG 61
>08_02_0689 + 20066140-20066505,20067930-20068217
Length = 217
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 99 ADIGRFGLSVILFFFLMAKILK 34
AD+G FG + FFL+ K+++
Sbjct: 190 ADVGLFGWHALSVFFLLPKVIR 211
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 53 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPG 154
+KKNK T + KR +A ++ + +Q K H G
Sbjct: 804 KKKNKRTQRRKRKQNAQVMKQHQFEKQRKLYHAG 837
>03_05_0124 +
21034963-21035181,21035618-21037466,21037485-21038194,
21038426-21038470,21038557-21038745
Length = 1003
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 17 HQFKNNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQI 136
HQ ++ K I+K K+T P P +L + + E+I
Sbjct: 874 HQLSSSLKKLVIKKCEKLTRLPTIPNLTILLLMGNLSEEI 913
>12_02_1045 +
25656495-25656566,25657788-25657884,25658327-25658419,
25658524-25658644,25659115-25659181,25659261-25659302,
25659455-25659583,25659674-25659733,25659887-25659929,
25660198-25660280,25660496-25661002,25661088-25661588
Length = 604
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 18 TSSKIISKFLPSGKKIK*RTSRSGLCQPI 104
T SK+I+KF S K+ RS C+ I
Sbjct: 107 TGSKVITKFEASAVKVTPNQMRSSACKMI 135
>10_03_0014 -
7060587-7060730,7060813-7060981,7061444-7061613,
7061701-7061879,7061978-7062043,7062394-7062567,
7062669-7062967,7063243-7063343,7063600-7063684,
7063797-7063947,7064267-7064451,7065599-7065786
Length = 636
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 23 FKNNFKIFAIRKKNKMTD 76
FK NFK+FA KK ++D
Sbjct: 607 FKRNFKVFANYKKGGVSD 624
>07_03_1263 +
25279899-25279985,25280263-25282372,25282700-25282793,
25283178-25283314,25283419-25283454,25283602-25283642,
25284036-25284125,25284229-25284284,25284947-25285030,
25285072-25285150
Length = 937
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 75 SVILFFFLMAKILKLFLNWCTTTSC 1
S++LFF+L+ ++ +FL +C C
Sbjct: 871 SLLLFFYLIIQLRCMFLVFCDNLLC 895
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 101 YMLWLNSAREQIKSEHPGL 157
++LW+++ R S HPGL
Sbjct: 239 FILWMSTIRTMCLSNHPGL 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,181,356
Number of Sequences: 37544
Number of extensions: 78484
Number of successful extensions: 218
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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