Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F12
(184 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 40 2e-04
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 38 7e-04
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 38 7e-04
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 38 0.001
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 36 0.005
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 35 0.007
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 33 0.027
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 33 0.027
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 33 0.027
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 33 0.027
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 33 0.027
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 33 0.027
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 32 0.047
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 32 0.047
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 32 0.047
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 32 0.047
U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical p... 27 1.3
AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical ... 27 1.3
Z82262-5|CAE17771.1| 679|Caenorhabditis elegans Hypothetical pr... 26 4.1
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 26 4.1
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 25 5.4
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical pr... 25 7.1
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 25 7.1
U53344-7|AAM15599.1| 183|Caenorhabditis elegans Hypothetical pr... 25 9.4
U53344-6|AAK77632.2| 702|Caenorhabditis elegans Hypothetical pr... 25 9.4
AF067217-5|AAO38635.1| 856|Caenorhabditis elegans Hypothetical ... 25 9.4
AF067217-4|AAF99978.1| 887|Caenorhabditis elegans Hypothetical ... 25 9.4
AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi doma... 25 9.4
AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi doma... 25 9.4
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 39.9 bits (89), Expect = 2e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 56 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKG 184
KK+K + PKR SAYM W ++R ++K + G V ++AKKG
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKG 588
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 38.3 bits (85), Expect = 7e-04
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +2
Query: 59 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAK 178
K K + PKR MSA+ W+ RE+IK PG+ V ++AK
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAK 58
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 38.3 bits (85), Expect = 7e-04
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +2
Query: 59 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAK 178
K K + PKR MSA+ W+ RE+IK PG+ V ++AK
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAK 58
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +2
Query: 65 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKK 181
K D+ KRPM+A+M+W R+++ E+P + +EI+K+
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKR 93
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 35.5 bits (78), Expect = 0.005
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +2
Query: 56 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKK 181
KK K ++PKR +AY++W N+ R +K + G + ++AKK
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKK 592
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 35.1 bits (77), Expect = 0.007
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 74 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKK 181
D KRPM+A+M+W R ++ ++P + +EI+K+
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKR 81
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 33.1 bits (72), Expect = 0.027
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 65 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKK 181
K ++ KRPM+A+M+W R +I P + EI+K+
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQ 126
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 33.1 bits (72), Expect = 0.027
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 53 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAK 178
R + K + KRPM+A+M+W R +I +P + + I+K
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISK 210
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 33.1 bits (72), Expect = 0.027
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 53 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAK 178
R + K + KRPM+A+M+W R +I +P + + I+K
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISK 207
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 33.1 bits (72), Expect = 0.027
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 53 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAK 178
R + K + KRPM+A+M+W R +I +P + + I+K
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISK 313
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 33.1 bits (72), Expect = 0.027
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 53 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAK 178
R + K + KRPM+A+M+W R +I +P + + I+K
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISK 361
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 33.1 bits (72), Expect = 0.027
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 53 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAK 178
R + K + KRPM+A+M+W R +I +P + + I+K
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISK 361
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 32.3 bits (70), Expect = 0.047
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 53 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKK 181
++ K PKR +SA+ + R +I++ HP KV ++A++
Sbjct: 125 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQE 167
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 32.3 bits (70), Expect = 0.047
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 53 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKK 181
++ K PKR +SA+ + R +I++ HP KV ++A++
Sbjct: 124 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQE 166
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 32.3 bits (70), Expect = 0.047
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 53 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKK 181
++ K PKR +SA+ + R +I++ HP KV ++A++
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQE 168
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 32.3 bits (70), Expect = 0.047
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 53 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKK 181
++ K PKR +SA+ + R +I++ HP KV ++A++
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQE 168
>U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical
protein F18A1.1 protein.
Length = 1075
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 85 LRLVRHFIFFPDGKNFEIIFELVHNH 8
L L RHF FPD + ++ +L++NH
Sbjct: 121 LDLKRHFFDFPDQEEPKVKIKLINNH 146
>AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical
protein Y42H9AR.2 protein.
Length = 133
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -2
Query: 171 ISVTFSPGCS-DLICSLALLSHSI*ADIG-RFGLSVILFFF-LMAKILKLFLNW 19
IS+ + GCS +I A + + +G F L + L F LMA I +FLNW
Sbjct: 16 ISLLITTGCSASIILFAATTKKDLTSCLGVAFILGICLMLFGLMACIFCIFLNW 69
>Z82262-5|CAE17771.1| 679|Caenorhabditis elegans Hypothetical
protein C43F9.10 protein.
Length = 679
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -2
Query: 84 FGLSVILFFFLMAKILKLFLNWCTT 10
+ L V + F+L+A I+ +FL++C+T
Sbjct: 135 WSLCVEMQFYLLAPIIFIFLSFCST 159
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +2
Query: 80 PKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAK 178
P+RP+ YM + ++++E+P ++ +I K
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGK 58
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 68 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAK 178
MT K + S Y+L+ R++I E+P E++K
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSK 1481
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 68 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAK 178
MT K + S Y+L+ R++I E+P E++K
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSK 1481
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 68 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAK 178
MT K + S Y+L+ R++I E+P E++K
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSK 111
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 138 LICSLALLSHSI*ADIG-RFGLSVILFFFL 52
LI SLALLS ++ AD G + L V +F L
Sbjct: 242 LISSLALLSFTLPADCGEKLNLGVTIFMSL 271
>Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical
protein M02G9.2 protein.
Length = 398
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 72 RTSRSGLCQPICCGSTVPENRSSLN 146
RTS S C +C S VP N N
Sbjct: 220 RTSCSSACLSVCASSGVPGNECQSN 244
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 138 LICSLALLSHSI*ADIG-RFGLSVILFFFL 52
LI SLALLS ++ AD G + L V +F L
Sbjct: 242 LISSLALLSFTLPADCGEKLNLGVTIFMSL 271
>U53344-7|AAM15599.1| 183|Caenorhabditis elegans Hypothetical
protein T07H6.1b protein.
Length = 183
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 145 FRLDLFSGTVEPQHIG*HRPLRLVRHFIFFPDGKNFEIIFELVHNHL 5
F +FSG Q++ PL+L+ I FPD + + EL+ ++
Sbjct: 66 FSWPIFSGN-SSQYVSLDVPLKLLEGEIHFPDAQFWNTEAELITRYV 111
>U53344-6|AAK77632.2| 702|Caenorhabditis elegans Hypothetical
protein T07H6.1a protein.
Length = 702
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 145 FRLDLFSGTVEPQHIG*HRPLRLVRHFIFFPDGKNFEIIFELVHNHL 5
F +FSG Q++ PL+L+ I FPD + + EL+ ++
Sbjct: 585 FSWPIFSGN-SSQYVSLDVPLKLLEGEIHFPDAQFWNTEAELITRYV 630
>AF067217-5|AAO38635.1| 856|Caenorhabditis elegans Hypothetical
protein F56A6.1b protein.
Length = 856
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 65 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKG 184
K+T KP +P+ Y + +N + +++++ AKKG
Sbjct: 49 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKG 88
>AF067217-4|AAF99978.1| 887|Caenorhabditis elegans Hypothetical
protein F56A6.1a protein.
Length = 887
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 65 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKG 184
K+T KP +P+ Y + +N + +++++ AKKG
Sbjct: 49 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKG 88
>AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform c protein.
Length = 887
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 65 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKG 184
K+T KP +P+ Y + +N + +++++ AKKG
Sbjct: 49 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKG 88
>AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform a protein.
Length = 913
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 65 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKG 184
K+T KP +P+ Y + +N + +++++ AKKG
Sbjct: 75 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKG 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,553,798
Number of Sequences: 27780
Number of extensions: 74924
Number of successful extensions: 254
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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