Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F12
         (184 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   1.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   5.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   7.2  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              18   9.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    18   9.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    18   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    18   9.5  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 107 LWLNSAREQIKSEHPGLKV 163
           +W  + R + K ++PGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +2

Query: 134 IKSEHPGLKVTEIAKK 181
           I ++ PGL+ TE+ ++
Sbjct: 346 IAADRPGLRNTELVER 361


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 62  NKMTDKPKRPMS 97
           NKM+ + KRP S
Sbjct: 102 NKMSTRGKRPAS 113


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 96  QPICCGST 119
           QPIC G T
Sbjct: 30  QPICVGET 37


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 27  KIISKFLPSGKK 62
           K ++ F P GKK
Sbjct: 239 KFVNIFFPGGKK 250


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 175 GYFSDFQPRMFRLDLFSGTVEPQHI 101
           G + + + R +   L +GT+  QH+
Sbjct: 752 GEYEELRERAYTKILSNGTLLLQHV 776


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 175 GYFSDFQPRMFRLDLFSGTVEPQHI 101
           G + + + R +   L +GT+  QH+
Sbjct: 748 GEYEELRERAYTKILSNGTLLLQHV 772


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,460
Number of Sequences: 438
Number of extensions: 836
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)