Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F10
(352 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 161 2e-41
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 155 2e-39
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 81 5e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 56 1e-09
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 0.64
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 25 3.4
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.4
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 4.5
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 4.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 4.5
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 24 6.0
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 24 7.9
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 24 7.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 24 7.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 161 bits (392), Expect = 2e-41
Identities = 72/114 (63%), Positives = 90/114 (78%), Gaps = 2/114 (1%)
Frame = +1
Query: 16 ARG--AIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 189
ARG +GKE++D VL+RIR++AD C+GLQGFL+FH LL+ERL+++YGK
Sbjct: 108 ARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGK 167
Query: 190 KCKLECGIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 351
K L+ +YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNL
Sbjct: 168 KSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNL 221
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 155 bits (376), Expect = 2e-39
Identities = 70/114 (61%), Positives = 88/114 (77%), Gaps = 2/114 (1%)
Frame = +1
Query: 16 ARG--AIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGK 189
ARG +GKE+VD V D+IR++AD C+GLQGFL+FH LL+ERL+++Y K
Sbjct: 104 ARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTK 163
Query: 190 KCKLECGIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 351
K KL+ +YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNL
Sbjct: 164 KSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNL 217
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 81.0 bits (191), Expect = 5e-17
Identities = 39/107 (36%), Positives = 57/107 (53%)
Frame = +1
Query: 31 GKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKCKLECG 210
G E+ D VLD +R+ A+ C LQGF + H LL+ ++ +Y +
Sbjct: 109 GAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFS 168
Query: 211 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 351
+ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I L
Sbjct: 169 VAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTL 215
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 56.4 bits (130), Expect = 1e-09
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +1
Query: 34 KEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKCKLECGI 213
+ I + ++D I + AD L+GF + H L+ERL+ Y KK +
Sbjct: 112 ERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSV 171
Query: 214 YPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 351
+P Q VS VV+PYNS+L ++D ++DN A+ I L
Sbjct: 172 FPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRL 218
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 0.64
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 267 KDRVVGLYNSSGHLGCGIDTALQFTLLAVVNGESLHEERSETRTGATTERVEDEESL-EA 91
KD++ L N + HLG + +A Q + E + + +++ RV++E + E
Sbjct: 146 KDQIEALQNENSHLGEQVQSAHQAL-------SDIEERKKQHMFASSSSRVKEEILVQEK 198
Query: 90 CALVSEFADAVED 52
ALVS+ A D
Sbjct: 199 SALVSDLASLQSD 211
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -2
Query: 213 DTALQFTLLAVVNGESLHEERSETRTGATTERVEDEE 103
DT + + + + S+H S +TG T+ +V +E
Sbjct: 239 DTTTELSKDLISSSSSIHSTYSSAQTGLTSAKVSSDE 275
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.0 bits (52), Expect = 3.4
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 174 GESLHEERSETRTGATTERVEDEESLEACALVSEFADAVEDQVYDFLSNGASCRNPAA 1
G++ E + T E E+E+ +E A S F++ E++ YDF G AA
Sbjct: 56 GKNPERELNSDGTDRIIEEEEEEDDIENEA--SSFSEQSENENYDFSYPGTFVYRKAA 111
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 204 VRYLSRTPGVHCCCRALQLYPYN 272
V ++S+ P H C L + PYN
Sbjct: 627 VGHISQLPKAHTCFNRLDIPPYN 649
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 24.6 bits (51), Expect = 4.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 111 DEESLEA-CALVSEFADAVEDQVYDFLSNGASCRNPA 4
D ES CA++ A+ V DQ++D N S PA
Sbjct: 317 DSESYTLRCAIIEVLANVVIDQIHDEAQNEMSESVPA 353
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.6 bits (51), Expect = 4.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 186 AVVNGESLHEERSETRTGATTERVEDEESLE 94
AVVNG S H + + + + ESLE
Sbjct: 662 AVVNGNSQHHHNRDDASSGLSSNGSENESLE 692
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 263 IEL*GSTTAVDTWGAG 216
IEL G+TTA D W G
Sbjct: 176 IELVGATTASDIWSVG 191
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 318 IVDHESTIGVFQGGVGCKDRVVGLYNSSG 232
+VD E+ I QGG GC +G ++ +G
Sbjct: 95 VVDSETFIVWLQGGPGCAG-TLGFFSENG 122
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 23.8 bits (49), Expect = 7.9
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = -2
Query: 351 QVTSADVIDGFIVDHESTIGVFQGGVGCKDRVVGLYNSSGHLGCGIDTALQFTLLAVVNG 172
+ + +D+IDG ++ ES +G+ ++ ++ + GH G +D ++Q + N
Sbjct: 1017 ETSPSDLIDGSLI--ESILGL-------REPILNEIVNGGHEGTKLDISVQDLKSIIENL 1067
Query: 171 ESLH 160
E LH
Sbjct: 1068 EKLH 1071
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 23.8 bits (49), Expect = 7.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 10 ISARGAIGKEIVDLVLDRIRKLADQCTGLQGFL 108
+ AR A ++ V +D+IR+ D+C L G L
Sbjct: 1679 VQARNAELEDEVSRSVDKIRRRDDRCEHLSGKL 1711
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,489,183
Number of Sequences: 5004
Number of extensions: 27049
Number of successful extensions: 91
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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