Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F07
         (149 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    26   0.59 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      24   2.4  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    24   3.1  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    24   3.1  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    23   4.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    22   9.6  

>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 145 LPLDEIYLVILPSRSCPVLVPSYPG 71
           + LD++ +  L  ++ P++VPSY G
Sbjct: 1   MTLDQVRIPFLVEQTYPIIVPSYAG 25


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 35  ILKHHNKYVF 64
           +LKHHNKY F
Sbjct: 780 VLKHHNKYKF 789


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 53  KYVFTGAWI 79
           KY+FTGAWI
Sbjct: 411 KYLFTGAWI 419


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 74  WIGRDEDGTGTGREYNEIDFI 136
           WIG+ E+GT +G  ++  D I
Sbjct: 166 WIGKSENGTSSGLHHDFHDNI 186


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 121 VILPSRSCPVLVPSYPGPS 65
           ++LP+ + P  +P YP P+
Sbjct: 576 IVLPNSAMPSAMPMYPTPT 594


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 127 YLVILPSRSCPVLVPSYPGPSKD 59
           Y++I    +   LVP+Y G SK+
Sbjct: 624 YILIFIGWNLAALVPAYSGESKE 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,126
Number of Sequences: 5004
Number of extensions: 8202
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 30
effective length of database: 2,212,358
effective search space used: 42034802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)