Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F07
         (149 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB051293-1|BAB55599.1| 1208|Homo sapiens SWI related protein pro...    28   6.1  
AL359257-2|CAI39759.1| 4640|Homo sapiens AC001226.5 protein.           27   8.0  
AL159158-1|CAI16842.1| 4640|Homo sapiens AC001226.5 protein.           27   8.0  
AL159154-1|CAH73736.1| 4640|Homo sapiens AC001226.5 protein.           27   8.0  
AF075587-1|AAC39928.1| 4641|Homo sapiens protein associated with...    27   8.0  

>AB051293-1|BAB55599.1| 1208|Homo sapiens SWI related protein protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 113  PVPFLSRPRPVLSRPQ*RHIYYDALI 36
            PVP ++RP P   +P  +H+YY+  I
Sbjct: 1177 PVPPMTRPPPSNYQPPPKHMYYNVCI 1202


>AL359257-2|CAI39759.1| 4640|Homo sapiens AC001226.5 protein.
          Length = 4640

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 109 SRSCPVLVPSYPGPSKDI 56
           SR CP LV + PGPS  +
Sbjct: 941 SRGCPTLVQALPGPSTQV 958


>AL159158-1|CAI16842.1| 4640|Homo sapiens AC001226.5 protein.
          Length = 4640

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 109 SRSCPVLVPSYPGPSKDI 56
           SR CP LV + PGPS  +
Sbjct: 941 SRGCPTLVQALPGPSTQV 958


>AL159154-1|CAH73736.1| 4640|Homo sapiens AC001226.5 protein.
          Length = 4640

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 109 SRSCPVLVPSYPGPSKDI 56
           SR CP LV + PGPS  +
Sbjct: 941 SRGCPTLVQALPGPSTQV 958


>AF075587-1|AAC39928.1| 4641|Homo sapiens protein associated with
           Myc protein.
          Length = 4641

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 109 SRSCPVLVPSYPGPSKDI 56
           SR CP LV + PGPS  +
Sbjct: 941 SRGCPTLVQALPGPSTQV 958


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,521,606
Number of Sequences: 237096
Number of extensions: 311410
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 76,859,062
effective HSP length: 30
effective length of database: 69,746,182
effective search space used: 1325177458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)