Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F07
         (149 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ...    25   5.5  
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ...    25   5.5  
Z68134-1|CAA92226.2|  492|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
           protein 25, isoformb protein.
          Length = 1130

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 121 VILPSRSCPVLVPSYPGPS 65
           V+ P+   PVL+P+ P PS
Sbjct: 516 VLPPTNKAPVLIPTNPAPS 534


>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
           protein 25, isoforma protein.
          Length = 1237

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 121 VILPSRSCPVLVPSYPGPS 65
           V+ P+   PVL+P+ P PS
Sbjct: 623 VLPPTNKAPVLIPTNPAPS 641


>Z68134-1|CAA92226.2|  492|Caenorhabditis elegans Hypothetical
           protein T27A8.1 protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 142 PLDEIYLVILPSRSCPVLVPSYPGPSKD 59
           P  E+ L  +  RS PVL+P+   P+KD
Sbjct: 427 PYIEVRLQRIIPRSRPVLIPTKSVPNKD 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,779
Number of Sequences: 27780
Number of extensions: 45324
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 12,740,198
effective HSP length: 30
effective length of database: 11,906,798
effective search space used: 226229162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)