Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F05
(236 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 89 7e-20
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 69 6e-14
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 27 0.44
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 1.3
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 24 2.3
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 24 3.1
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 23 4.1
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 23 4.1
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 23 5.4
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 23 5.4
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c... 23 5.4
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 23 7.1
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 23 7.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 23 7.1
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 22 9.4
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 22 9.4
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 22 9.4
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 22 9.4
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 22 9.4
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 22 9.4
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 22 9.4
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 22 9.4
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 89.0 bits (211), Expect = 7e-20
Identities = 37/74 (50%), Positives = 54/74 (72%)
Frame = +1
Query: 13 SFGDDNMLLEQYITDPRHVEVQVFADMHGNAVHLFERDCSVQRRHQKIIEEAPAPGLSEE 192
SFGD + +E+++ P+H+E+Q+ AD GN +HL ERDCSVQRRHQK++E APA L +
Sbjct: 225 SFGDGTVFIERFLDKPKHIEIQLMADKAGNVIHLHERDCSVQRRHQKVVEIAPAKDLDPK 284
Query: 193 TRFSLGEAAVRAAK 234
R +L + A++ AK
Sbjct: 285 IRQALYDDAIKIAK 298
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 69.3 bits (162), Expect = 6e-14
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = +1
Query: 61 RHVEVQVFADMHGNAVHLFERDCSVQRRHQKIIEEAPAPGLSEETRFSLGEAAVR 225
RH+EVQ+ AD +GN + LF RDCSVQRRHQKIIEEAP T + AAVR
Sbjct: 307 RHLEVQILADQYGNNISLFGRDCSVQRRHQKIIEEAPVTIAPAATFHEMERAAVR 361
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.6 bits (56), Expect = 0.44
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 19 GDDNMLLEQYITDPRHVEVQVFADMHGNAVHL---FERDCSVQRRHQKII 159
G D+ L++Q I+DP V+ +A+H+ F R+ S+ +++ I+
Sbjct: 665 GQDDSLIQQIISDPETVKTLSETYSSEDALHVLKFFVRERSITNKYEDIL 714
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.0 bits (52), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 153 LLVPSLH*AIPFKQMYSISMHICKYL-HFYMSRICDVLF 40
L +P+ H + F QMY++ C Y HF +S++ LF
Sbjct: 82 LPIPAYH-PLFFSQMYNLLRSTCLYCHHFKLSKVKVHLF 119
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 145 HQKIIEEAPAPGLSEET 195
HQK+ E +P PG+ + T
Sbjct: 702 HQKLDESSPVPGIDDVT 718
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 23.8 bits (49), Expect = 3.1
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +1
Query: 7 GKSFGDDNMLLEQYITDPRHVEVQVFADMHGNAVHLFERDCSVQRRHQKIIEEAPAPGLS 186
GK D N+L+ + I++ H Q H N + V ++K+I E P
Sbjct: 384 GKPILDSNLLIAKQISENSHPVPQEIKSFHRNQI------IEVPWLNRKLISEGATPKFH 437
Query: 187 EE 192
E
Sbjct: 438 SE 439
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 23.4 bits (48), Expect = 4.1
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = -2
Query: 217 PLHRAKSESPPIIPAQALLQ*SFGAVFALSNPFQTNVQHFHAYLQIPALLHVSDL 53
PLH+A + P + LLQ G + L + V + H L + V D+
Sbjct: 968 PLHQASTRLAIAFPDKRLLQYDCGKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDI 1022
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 133 LSNPFQTNVQHFH 95
+SNP + N+QH H
Sbjct: 64 ISNPSKNNIQHLH 76
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 220 LPLHRAKSESPPIIPAQALLQ*SFGAVFALS 128
+P +KS+S P +PA LLQ ++ S
Sbjct: 415 VPSSPSKSQSGPSLPANPLLQTDISITYSQS 445
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 56 SVMYCSRSMLSSP 18
SV YCS S LSSP
Sbjct: 525 SVSYCSDSSLSSP 537
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 23.0 bits (47), Expect = 5.4
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = -1
Query: 74 TSTCLGSVMYCSRSML 27
T C+G+ +YC+ +M+
Sbjct: 812 TPVCIGASLYCNNAMI 827
>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -1
Query: 158 MIFWCRLCTEQSLSNKCTAFPCISANTCTSTCL 60
+ F LC Q S+ T+F C + + TC+
Sbjct: 30 LCFTVMLCVVQQCSSAMTSFRCPTFSLSKYTCV 62
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 30 HASGTIHHRSETCRSAGICRYAWKC 104
++ G I HRS C+ A + +KC
Sbjct: 138 YSCGKIGHRSFECQQASDGQLCYKC 162
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 136 ALSNPFQTNVQHFHAY 89
+LS+PF +Q FH Y
Sbjct: 293 SLSDPFNHTLQSFHPY 308
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 92 ISANTCTSTCLGSV 51
I+ N C STCLG V
Sbjct: 965 IAYNLCYSTCLGPV 978
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -1
Query: 101 FPCISANTCTSTCLGSVMYCS 39
FPC+ N C G ++ C+
Sbjct: 82 FPCVHLNGCVVYDKGEIVACA 102
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 22.2 bits (45), Expect = 9.4
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -1
Query: 152 FWCRLCTE 129
FWCR+C E
Sbjct: 188 FWCRVCRE 195
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +1
Query: 7 GKSFGDDNMLLEQYITDPRHVEVQVFADMHGNAVHLFERDCS 132
GKS D + L E Y+T+ + D + L E S
Sbjct: 412 GKSLEDSDSLSELYLTNEEKKMASIIKDSVNVQIKLIESKLS 453
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +2
Query: 38 WNNTSQIRDM*KC-RYLQICMEMLYIC 115
WNNTS ++D + LQ M + C
Sbjct: 790 WNNTSNLKDSAVLFKVLQTSRSMAFTC 816
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 22.2 bits (45), Expect = 9.4
Identities = 5/16 (31%), Positives = 10/16 (62%)
Frame = -1
Query: 155 IFWCRLCTEQSLSNKC 108
++WC+ C + + KC
Sbjct: 363 LYWCQTCYDNKYAVKC 378
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 22.2 bits (45), Expect = 9.4
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = -1
Query: 230 AARTAASPSEKRVSSDNPGAGASSMIFWCRLCTEQSLSNKCTAFPCISANTCTSTCLGSV 51
++ +++S S+ SS + +SS R + +S S + T FP + + T +
Sbjct: 151 SSSSSSSSSKSSSSSSKSSSRSSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNITNATNG 210
Query: 50 MYCS 39
YC+
Sbjct: 211 TYCN 214
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 209 PSEKRVSSDNPGAGASSMIFWCRL 138
P EK + P AG S +W R+
Sbjct: 122 PDEKELEKQYPAAGYSPSDWWNRV 145
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 121 RDCSVQRRHQKIIEEAPAPGLSEETRFS 204
+D S + K IEE P P L E + S
Sbjct: 144 KDLSTPQDSSKPIEEKPMPDLGAEQKES 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 992,563
Number of Sequences: 5004
Number of extensions: 17421
Number of successful extensions: 64
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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