Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F05
(236 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 69 7e-13
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 67 2e-12
12_02_1039 + 25610200-25610538,25611022-25611143,25611243-256113... 36 2e-04
05_07_0071 - 27481876-27482737,27484328-27484950 28 1.2
07_03_0879 - 22256033-22256173,22256417-22256492,22256830-222572... 26 3.7
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307... 26 3.7
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581... 26 4.9
01_01_0955 - 7494486-7496327 26 4.9
06_03_0805 + 24775346-24775543,24775643-24775858,24775930-247759... 25 6.5
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826... 25 6.5
02_03_0203 + 16365262-16365644,16365774-16365869,16365991-163662... 25 6.5
01_07_0075 + 40908875-40909069,40909147-40909215,40909363-409094... 25 6.5
01_06_0678 - 31114259-31114321,31114508-31114552,31114644-311147... 25 6.5
12_01_0347 + 2658545-2659309 25 8.6
06_03_0804 + 24761974-24763196,24763674-24764019 25 8.6
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 25 8.6
>10_06_0102 +
10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 68.5 bits (160), Expect = 7e-13
Identities = 34/58 (58%), Positives = 37/58 (63%)
Frame = +1
Query: 61 RHVEVQVFADMHGNAVHLFERDCSVQRRHQKIIEEAPAPGLSEETRFSLGEAAVRAAK 234
RH+EVQ+ D HGN L RDCSVQRRHQKIIEE P ET L +AA R AK
Sbjct: 271 RHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPITVAPSETVKELEQAARRLAK 328
>05_03_0359 -
12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 66.9 bits (156), Expect = 2e-12
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +1
Query: 61 RHVEVQVFADMHGNAVHLFERDCSVQRRHQKIIEEAPAPGLSEETRFSLGEAAVRAAK 234
RH+EVQ+ D +GN L RDCSVQRRHQKIIEE P ET L +AA R AK
Sbjct: 455 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQAARRLAK 512
>12_02_1039 +
25610200-25610538,25611022-25611143,25611243-25611390,
25611681-25611818,25612106-25612165,25612234-25612392,
25612714-25612912,25613156-25613260,25613339-25613475,
25613812-25614037,25614119-25614282,25614408-25614524,
25614622-25614864,25614959-25615054,25615270-25615287
Length = 756
Score = 36.3 bits (80), Expect(2) = 2e-04
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +1
Query: 13 SFGDDNMLLEQYITDPRHVEVQ 78
SFG + +L+E+YIT PRH+EVQ
Sbjct: 228 SFGINTLLVEKYITQPRHIEVQ 249
Score = 23.0 bits (47), Expect(2) = 2e-04
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 175 PGLSEETRFSLGEAAVRAAK 234
P ++ + R +GEAAV AAK
Sbjct: 250 PNVTAQFRSHIGEAAVSAAK 269
>05_07_0071 - 27481876-27482737,27484328-27484950
Length = 494
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = -1
Query: 224 RTAASPSEKRVSSDNPGAGASSMIFWCRLCTEQSLSNKCTAFPCISANTCTSTCLGSVMY 45
R AASPS ++ +P A S + R+ S + PC S+ TC ST S+
Sbjct: 139 RGAASPSHATATA-SPAAAPSPAVAPPRVFRPGD-SKTWSPIPC-SSETCKSTIPFSLAN 195
Query: 44 CSRSMLSSPNDF 9
CS S + D+
Sbjct: 196 CSSSTAACSYDY 207
>07_03_0879 -
22256033-22256173,22256417-22256492,22256830-22257212,
22257924-22257983,22258073-22258303,22258475-22258562,
22259265-22259365,22259586-22259727,22259824-22259939
Length = 445
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 209 PSEKRVSSDNPGAGASSMIFWCRLCTEQSLSN--KCTAFP 96
PSE+ A A+++ CRLC ++ L C+ FP
Sbjct: 60 PSERAAHHRELAAAAAAVERACRLCVDRKLGTGVSCSRFP 99
>06_01_0433 -
3078576-3078780,3078797-3078951,3079782-3079821,
3079957-3080009,3080091-3080199,3080324-3080448,
3081112-3081201,3081280-3081342,3081453-3081544,
3081641-3081722,3081913-3082086,3082183-3082264,
3083100-3083224,3083312-3083389,3084047-3084402,
3085311-3085608
Length = 708
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 13 SFGDDNMLLEQYITDPRHVEVQVFADMHGNAVHLFERDCSVQ 138
+F D +++Q I+ PR + + VF + + N VH ER+ +Q
Sbjct: 633 AFMDQPYVMKQRIS-PRTLNLPVFHERNENFVHYMEREPVMQ 673
>05_06_0046 -
25157093-25157431,25157810-25157928,25158024-25158189,
25158289-25158415,25158490-25158590,25158719-25158905,
25159000-25159100,25159220-25160194,25160325-25160423,
25160500-25160972,25161307-25161420,25161830-25161900,
25162015-25162086,25162334-25162377
Length = 995
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 200 KRVSSDNPGAGASSMIFWCRLCTEQSLSNKCTA 102
K V+S PG+ + S FW R EQ CTA
Sbjct: 192 KAVASGQPGSPSLSPFFWLR---EQEEQEGCTA 221
>01_01_0955 - 7494486-7496327
Length = 613
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 203 EKRVSSDNPGAGASSMIFW 147
++ V SD PGAG + IFW
Sbjct: 61 QELVESDRPGAGWNYAIFW 79
>06_03_0805 +
24775346-24775543,24775643-24775858,24775930-24775970,
24776510-24776551,24777019-24777055,24779796-24780092
Length = 276
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -1
Query: 149 WCRLCTEQSLSNKCTAFPCISANTCTSTCLG 57
W R S C + P +S N C CLG
Sbjct: 15 WLRPLLSTSFFVACASHPELSKNECNLFCLG 45
>02_04_0114 +
19879468-19880671,19882007-19882179,19882265-19882605,
19882698-19882977,19883070-19883267,19883380-19883652
Length = 822
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 118 ERDCSVQRRHQKIIEEAP 171
ERD + +RR QK+I E P
Sbjct: 343 ERDAAFERRFQKVIVEEP 360
>02_03_0203 +
16365262-16365644,16365774-16365869,16365991-16366297,
16366417-16366664,16367201-16367438
Length = 423
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 86 ANTCTSTCLGSVMYCSRSMLSSPNDF 9
A CTS C+GS + +RS + S F
Sbjct: 293 AMLCTSLCIGSPLAINRSKILSSEGF 318
>01_07_0075 +
40908875-40909069,40909147-40909215,40909363-40909461,
40909999-40910078,40910162-40910444,40910557-40910580,
40911039-40911700,40912037-40912121,40912203-40912254,
40912336-40912385,40912450-40912497,40912590-40912766
Length = 607
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 110 CTAFPCISANTCTSTCL-GSVMYCSRSMLSSPNDF 9
C I A+TCT+ CL G+ C ++ +SS + +
Sbjct: 254 CHRVQAIVADTCTNCCLTGNSCACKQAHVSSHHHY 288
>01_06_0678 -
31114259-31114321,31114508-31114552,31114644-31114742,
31114827-31114872,31115026-31115102,31115385-31115432,
31120640-31120708,31120848-31120853,31120955-31121032,
31121246-31121344,31121427-31121489,31122642-31122713,
31122800-31122874,31122965-31123021,31123983-31124186,
31124317-31124394,31124485-31124547,31124646-31125284,
31125367-31125416,31125496-31125576,31125896-31125923
Length = 679
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 100 NAVHLFERDCSVQRRHQKIIEEAPAPGLSEETRFSLGE 213
+AV+L E+D +++ H+K I+E P +S +++ S E
Sbjct: 199 SAVNLEEKDSAMEVIHEKNIKEVPDTQVSGKSQDSKRE 236
>12_01_0347 + 2658545-2659309
Length = 254
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Frame = +1
Query: 130 SVQRRHQKII---EEA---PAPGLSEETRFSLGEAA 219
+++RR +K++ EEA PAP L TRF+ G A
Sbjct: 200 ALRRREEKVVLMTEEAAAAPAPALGGMTRFASGRRA 235
>06_03_0804 + 24761974-24763196,24763674-24764019
Length = 522
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -1
Query: 236 ALAARTAASPSEKRVSSDNPGAGAS 162
ALA RT AS VSSD G AS
Sbjct: 72 ALAVRTVASSGNASVSSDPGGPPAS 96
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 85 ADMHGNAVHLFERDCSVQRRHQKIIEEAPAPGLSEETRFS 204
AD G + + + RR+++ + APG +E+RFS
Sbjct: 212 ADNAGGKLLVHAYYSTTSRRYERFVALEEAPGSYDESRFS 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,847,830
Number of Sequences: 37544
Number of extensions: 127392
Number of successful extensions: 385
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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