Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F04
         (208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    24   3.2  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       23   5.5  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    23   5.5  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    22   9.6  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = -1

Query: 124 EQAHCSVVEQLFVEALVEGLQIVLFEAWFIDFLY 23
           ++ + S++EQLF  AL + +++ LF+ +  + +Y
Sbjct: 879 KKTYISILEQLFGGALEKRIRLQLFQLFTPEKIY 912


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 45  HGLLTFYTYRLEP 7
           HG   FY Y+ EP
Sbjct: 273 HGFFRFYAYKFEP 285


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 91  FVEALVEGLQIVLFEAWFIDFLY 23
           F+E   EG++++L E  F D  Y
Sbjct: 60  FLEVYYEGVELLLHEQDFYDLCY 82


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 159 PAPAAIDVWSNGRYC 203
           P P+ I  W+N  YC
Sbjct: 219 PLPSMIIPWNNASYC 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,982
Number of Sequences: 5004
Number of extensions: 6396
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)