Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F04
(208 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0911 + 20767041-20767047,20767119-20769322 28 1.2
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392... 27 1.6
10_06_0012 - 9586478-9588880 27 2.7
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637... 27 2.7
04_03_0923 + 20843477-20845044,20846081-20846996 27 2.7
11_01_0675 - 5508815-5511277 26 3.6
05_01_0478 - 3910575-3912989 26 3.6
05_01_0475 - 3818121-3820565 26 3.6
11_01_0673 - 5491694-5493102,5493386-5493995 25 8.4
10_02_0158 + 6011852-6012049,6012085-6012543 25 8.4
09_01_0107 - 1683618-1684028 25 8.4
05_01_0476 - 3896314-3898725 25 8.4
02_03_0089 - 15091579-15091989,15092088-15092588,15092704-150929... 25 8.4
>04_03_0911 + 20767041-20767047,20767119-20769322
Length = 736
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/39 (25%), Positives = 13/39 (33%)
Frame = +3
Query: 69 PXXXXXXXXXXXXEQCACSCTSIISCNTYGPAPAAIDVW 185
P ++CA +C S SC Y VW
Sbjct: 310 PDKAQSIGAATSADECAAACLSSCSCTAYSYGEGGCSVW 348
>05_01_0479 -
3920992-3921513,3921643-3921756,3921905-3922482,
3922709-3923067,3923132-3923205
Length = 548
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/55 (25%), Positives = 20/55 (36%)
Frame = +3
Query: 21 TYKKSINHASKRTICKPXXXXXXXXXXXXEQCACSCTSIISCNTYGPAPAAIDVW 185
T + HA R + P +CA +C S SCN Y + +W
Sbjct: 229 TSSTDVFHAIPR-VTLPYNPQSVDNATTQSKCAQACLSYCSCNAYSYERSRCSIW 282
>10_06_0012 - 9586478-9588880
Length = 800
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/49 (24%), Positives = 16/49 (32%)
Frame = +3
Query: 54 RTICKPXXXXXXXXXXXXEQCACSCTSIISCNTYGPAPAAIDVWSNGRY 200
+ I P +QC+ C S SC Y VW + Y
Sbjct: 357 QNIILPHNAMSVQTAGSKDQCSEVCLSNCSCTAYSYGKGGCSVWHDALY 405
>04_04_0687 -
27262742-27262784,27263429-27263584,27263698-27263783,
27263881-27264188,27265337-27265455,27265989-27266075,
27266440-27266546
Length = 301
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 108 EQCACSCTSIISCNTY-GPAPAAIDVWSNGR 197
EQC C+C ++ C + G P I+ + +
Sbjct: 74 EQCGCACATVHVCKAFSGECPTIIEQFQGAK 104
>04_03_0923 + 20843477-20845044,20846081-20846996
Length = 827
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/49 (22%), Positives = 19/49 (38%)
Frame = +3
Query: 54 RTICKPXXXXXXXXXXXXEQCACSCTSIISCNTYGPAPAAIDVWSNGRY 200
++I P ++C+ +C S SC Y + VW + Y
Sbjct: 362 QSIRLPHSAENVKVATSADECSQACLSNCSCTAYSYGKSGCSVWHDELY 410
>11_01_0675 - 5508815-5511277
Length = 820
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 111 QCACSCTSIISCNTYGPAPAAIDVW 185
+CA SC S SCN Y + VW
Sbjct: 403 KCAESCLSNCSCNAYAYKDSTCFVW 427
>05_01_0478 - 3910575-3912989
Length = 804
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 111 QCACSCTSIISCNTYGPAPAAIDVW 185
+CA SC S SCN Y +W
Sbjct: 396 KCAQSCLSYCSCNAYSYENNRCSIW 420
>05_01_0475 - 3818121-3820565
Length = 814
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 111 QCACSCTSIISCNTYGPAPAAIDVW 185
+CA +C S SCN Y + +W
Sbjct: 391 KCAQACLSYCSCNAYSYENSKCSIW 415
>11_01_0673 - 5491694-5493102,5493386-5493995
Length = 672
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 111 QCACSCTSIISCNTYGPAPAAIDVW 185
+CA C S SCN Y + VW
Sbjct: 324 KCAEVCLSNCSCNAYAYKDSVCSVW 348
>10_02_0158 + 6011852-6012049,6012085-6012543
Length = 218
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 76 VEGLQIVLFEAWFIDFL 26
+E LQ+ LF+ W ID++
Sbjct: 65 MENLQVELFDVWSIDYM 81
>09_01_0107 - 1683618-1684028
Length = 136
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 79 LVEGLQIVLFEAWFIDFL 26
L LQ+ LF+ W IDF+
Sbjct: 29 LTNNLQVELFDVWGIDFM 46
>05_01_0476 - 3896314-3898725
Length = 803
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 111 QCACSCTSIISCNTYGPAPAAIDVW 185
+CA +C S SCN Y +W
Sbjct: 396 KCAQACLSYCSCNAYSYENNICSIW 420
>02_03_0089 -
15091579-15091989,15092088-15092588,15092704-15092984,
15093104-15093443
Length = 510
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 193 PFDQTSMAAGAGP*VLQEMMEVHEQAH 113
PF+Q AG +Q+M + H+Q H
Sbjct: 135 PFEQEVATAGEAQSSIQKMRDEHQQLH 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,888,047
Number of Sequences: 37544
Number of extensions: 46876
Number of successful extensions: 174
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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