Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F01
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    64   4e-12
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   2.4  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   2.4  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   2.4  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    24   4.1  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    23   5.5  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    23   5.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    23   7.2  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 63.7 bits (148), Expect = 4e-12
 Identities = 26/36 (72%), Positives = 31/36 (86%)
 Frame = +2

Query: 161 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQ 268
           NPLF  R ++F IGQDIQP RDLSRFV+WP+YIR+Q
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQ 59


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 161 NPLFEKRTKNFAIGQDIQPTRDL 229
           +P+F KRT +F   Q ++ T+++
Sbjct: 315 SPVFRKRTSSFYFSQPLKATKEV 337


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 151 EDCKPSIREENKELCY 198
           E CK  + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 52  ELKSIQDGXXXXXXXDREKSSGRSTCGEES*A-QEDCKPSIREENKELC 195
           ELKS+ +G       D   S   S C +E  +     KPS   + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 160 YNLLGLNFLHHKW 122
           YN  GL++L H+W
Sbjct: 881 YNAAGLSYLRHEW 893


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 170 FEKRTKNFAIGQDIQPTRDLSRFV 241
           FE+R + FA    IQP  D+   V
Sbjct: 181 FERRNRMFASSARIQPNEDVQSVV 204


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 190 LCYWPGHPANQRSIPFRAMAEIY 258
           L YW  HP    S PF    E++
Sbjct: 304 LSYWQVHPFTLASAPFDDFIELF 326


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 208 VLANSKVLCSLLE*RVYNLLGLNFLH 131
           V    K L S ++ + Y L+G+N+LH
Sbjct: 537 VTEQPKTLASDVQLKSYQLVGVNWLH 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 980,330
Number of Sequences: 5004
Number of extensions: 14654
Number of successful extensions: 47
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)