Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F01
(268 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 56 3e-09
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 56 5e-09
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 56 5e-09
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 26 4.8
06_01_0546 + 3895007-3895888,3896506-3896682 25 6.3
06_01_0543 + 3883184-3884065,3884683-3884859 25 6.3
06_01_0533 + 3845128-3846009,3846627-3846803 25 6.3
02_02_0451 + 10387353-10387580,10387675-10387934,10388160-103884... 25 6.3
10_08_0902 - 21449748-21449993,21450136-21450460,21450658-214509... 25 8.3
06_01_0548 + 3904487-3904711,3904805-3905064,3905284-3905608,390... 25 8.3
06_01_0545 + 3892664-3892888,3892914-3893173,3893393-3893717,389... 25 8.3
06_01_0535 + 3854608-3854832,3854926-3855185,3855405-3855729,385... 25 8.3
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 56.4 bits (130), Expect = 3e-09
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2
Query: 161 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQ 268
NPLFEKR K F IG + P +DL RFVRWPK +RIQ
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQ 58
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 55.6 bits (128), Expect = 5e-09
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +2
Query: 161 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQ 268
NPLFEKR K F IG + P +DL RFV+WPK +RIQ
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQ 57
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 55.6 bits (128), Expect = 5e-09
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +2
Query: 161 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQ 268
NPLFEKR K F IG + P +DL RFV+WPK +RIQ
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQ 41
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 163 PSIREENKELCYWPGHPAN 219
P E N ++C W GHP N
Sbjct: 90 PVDHEINSKICLWRGHPWN 108
>06_01_0546 + 3895007-3895888,3896506-3896682
Length = 352
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 175 EENKELCYWPGHPANQRSI 231
EE + L +WP HPA R +
Sbjct: 169 EEERRLEFWPEHPAALRGL 187
>06_01_0543 + 3883184-3884065,3884683-3884859
Length = 352
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 175 EENKELCYWPGHPANQRSI 231
EE + L +WP HPA R +
Sbjct: 169 EEERRLEFWPEHPAALRGL 187
>06_01_0533 + 3845128-3846009,3846627-3846803
Length = 352
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 175 EENKELCYWPGHPANQRSI 231
EE + L +WP HPA R +
Sbjct: 169 EEERRLEFWPEHPAALRGL 187
>02_02_0451 +
10387353-10387580,10387675-10387934,10388160-10388484,
10388819-10389061
Length = 351
Score = 25.4 bits (53), Expect = 6.3
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +1
Query: 175 EENKELCYWPGHPANQRSI 231
+E ++L +WP HP + R +
Sbjct: 147 KEEQDLAFWPDHPESFRDV 165
>10_08_0902 -
21449748-21449993,21450136-21450460,21450658-21450905,
21451091-21451324
Length = 350
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +1
Query: 178 ENKELCYWPGHPANQRS 228
E+++L +WP HP++ R+
Sbjct: 146 ESRDLRFWPAHPSSFRN 162
>06_01_0548 +
3904487-3904711,3904805-3905064,3905284-3905608,
3905729-3905971
Length = 350
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 175 EENKELCYWPGHPANQRSI 231
+E + L +WP HP + R +
Sbjct: 146 KEERNLAFWPDHPESFRDV 164
>06_01_0545 +
3892664-3892888,3892914-3893173,3893393-3893717,
3893838-3893999,3894192-3894272
Length = 350
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 175 EENKELCYWPGHPANQRSI 231
+E + L +WP HP + R +
Sbjct: 146 KEERNLAFWPDHPESFRDV 164
>06_01_0535 +
3854608-3854832,3854926-3855185,3855405-3855729,
3855850-3856092
Length = 350
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 175 EENKELCYWPGHPANQRSI 231
+E + L +WP HP + R +
Sbjct: 146 KEERNLAFWPDHPESFRDV 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,279,169
Number of Sequences: 37544
Number of extensions: 93439
Number of successful extensions: 258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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