Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F01
         (268 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   0.65 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   0.65 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   1.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   1.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   3.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   6.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   6.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    19   8.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 0.65
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 154 DCKPSIREENKELCYWPGHPANQ-RSIPFRAM 246
           DC   I +E   L YW G+ AN  R  P +A+
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 0.65
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 154 DCKPSIREENKELCYWPGHPANQ-RSIPFRAM 246
           DC   I +E   L YW G+ AN  R  P +A+
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 184 KELCYWPGHPANQ 222
           ++ CY+P HP+ Q
Sbjct: 385 EKTCYYPYHPSTQ 397


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 184 KELCYWPGHPANQ 222
           ++ CY+P HP+ Q
Sbjct: 385 EKTCYYPYHPSTQ 397


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -3

Query: 230 IDLWLAGC 207
           +D+W+AGC
Sbjct: 262 LDVWMAGC 269


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 166 RVYNLLGLNFLHHKWSG 116
           R++NL+ +  L   WSG
Sbjct: 278 RIFNLICMMLLIGHWSG 294


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 166 RVYNLLGLNFLHHKWSG 116
           R++NL+ +  L   WSG
Sbjct: 246 RIFNLICMMLLIGHWSG 262


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 161 NPLFEKRTKNFAIGQDIQPTRDLSRFV 241
           NP +E+    +   QDI  T+   + V
Sbjct: 288 NPQYEENNVQYEGSQDILNTQSFGKVV 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,832
Number of Sequences: 438
Number of extensions: 977
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)