Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E24
         (217 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0137 + 12667763-12667930,12668715-12668779,12668879-126689...    27   2.1  
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350...    26   3.6  
01_06_0784 + 31979670-31979976,31980092-31980337,31980428-319805...    26   3.6  
04_01_0223 + 2813129-2814014,2815928-2816309,2816358-2816459,281...    25   8.3  
02_01_0254 - 1669461-1669590,1669833-1672318                           25   8.3  

>09_03_0137 +
           12667763-12667930,12668715-12668779,12668879-12668954,
           12669142-12669339,12669716-12669795,12670670-12670913,
           12671061-12671162,12671243-12671305,12671550-12671627,
           12671905-12671967,12672163-12672209,12672328-12672496
          Length = 450

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 110 MVRFRKILLNSVSPHPSLT*DSPPXMFFLKTT 205
           ++RF ++LL+++  HP    D+    FF++ T
Sbjct: 73  LLRFLRLLLHTILKHPDYRTDNSSVKFFIEKT 104


>07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,
            3505561-3505653,3505926-3506891,3507267-3507485,
            3508038-3508247,3508371-3508630,3508956-3510737,
            3510796-3511009
          Length = 1414

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 217  PHNPSRFQKKHXWGRISRETRVRGDGVE*NLTKSHHREAGEV 92
            PHN     KK+ WG  S + R+    +    T+S  R  GEV
Sbjct: 966  PHNFIEALKKYNWGAFSYDARICKTNI---ATRSAMRGPGEV 1004


>01_06_0784 +
           31979670-31979976,31980092-31980337,31980428-31980544,
           31980638-31980792,31980910-31980984,31981080-31981346,
           31981436-31981756,31981858-31982271
          Length = 633

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 115 HHREAGEVGKFSKMPYVTNGRPLKQY 38
           HH++AGEV    KM    NGR L  +
Sbjct: 553 HHQQAGEVDAPCKMTGSPNGRTLLDF 578


>04_01_0223 +
           2813129-2814014,2815928-2816309,2816358-2816459,
           2816727-2817249
          Length = 630

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 127 LTKSHHREAGEVGKFS 80
           +TK HH++ G  GKF+
Sbjct: 293 VTKGHHKKKGAAGKFA 308


>02_01_0254 - 1669461-1669590,1669833-1672318
          Length = 871

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 9   EFAEKNAAR*YCLRGRPLVT*GIFENLPT 95
           EF+    AR YC  GR +   G+ +++PT
Sbjct: 181 EFSFGILARGYCRAGRSMDALGVLDSMPT 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,842,006
Number of Sequences: 37544
Number of extensions: 100753
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)