Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E24
         (217 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83110-6|CAB05528.3|  545|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z81462-8|CAB03846.3|  545|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily ass...    25   7.3  
U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily ass...    25   7.3  
U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily ass...    25   7.3  

>Z83110-6|CAB05528.3|  545|Caenorhabditis elegans Hypothetical
           protein F57C2.6 protein.
          Length = 545

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 57  DAPLNNTNGQHFSQQI 10
           D  LN TNGQHF+  +
Sbjct: 350 DLMLNETNGQHFNDSL 365


>Z81462-8|CAB03846.3|  545|Caenorhabditis elegans Hypothetical
           protein F57C2.6 protein.
          Length = 545

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 57  DAPLNNTNGQHFSQQI 10
           D  LN TNGQHF+  +
Sbjct: 350 DLMLNETNGQHFNDSL 365


>U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform c protein.
          Length = 485

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 217 PHNPSRFQKKHXWGRISRETR--VRGDGVE*NLTKSHHR 107
           PH+ +R Q  H  GR++   R     + VE +L  SH R
Sbjct: 225 PHSRTRVQVNHNCGRVNYSVRPVEYANRVENSLKPSHER 263


>U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform b protein.
          Length = 592

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 217 PHNPSRFQKKHXWGRISRETR--VRGDGVE*NLTKSHHR 107
           PH+ +R Q  H  GR++   R     + VE +L  SH R
Sbjct: 332 PHSRTRVQVNHNCGRVNYSVRPVEYANRVENSLKPSHER 370


>U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform a protein.
          Length = 564

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 217 PHNPSRFQKKHXWGRISRETR--VRGDGVE*NLTKSHHR 107
           PH+ +R Q  H  GR++   R     + VE +L  SH R
Sbjct: 304 PHSRTRVQVNHNCGRVNYSVRPVEYANRVENSLKPSHER 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,888,540
Number of Sequences: 27780
Number of extensions: 82118
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)