Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_E23
(293 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 150 2e-37
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 150 2e-37
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 148 9e-37
01_01_1101 + 8731427-8732938 29 0.49
04_04_0950 + 29609484-29611025 27 2.0
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 2.6
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 27 2.6
08_02_0803 + 21390525-21391066,21391799-21391958 27 3.5
01_01_0848 + 6614403-6614768 26 4.6
04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445... 26 6.1
02_05_0432 + 28936293-28936796,28937382-28939250 26 6.1
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 26 6.1
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573 25 8.0
09_04_0097 - 14573499-14574110,14574977-14575017,14575424-145756... 25 8.0
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 25 8.0
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 25 8.0
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 150 bits (364), Expect = 2e-37
Identities = 67/88 (76%), Positives = 76/88 (86%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 208
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 209 VLKIVKQRLIKVDGKVRTDATYPAGFMD 292
V+ I+ QR + VDGKVRTD TYPAGFMD
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMD 88
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 150 bits (364), Expect = 2e-37
Identities = 67/88 (76%), Positives = 76/88 (86%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 208
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 209 VLKIVKQRLIKVDGKVRTDATYPAGFMD 292
V+ I+ QR + VDGKVRTD TYPAGFMD
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMD 88
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 148 bits (358), Expect = 9e-37
Identities = 66/87 (75%), Positives = 74/87 (85%)
Frame = +2
Query: 32 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 211
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 212 LKIVKQRLIKVDGKVRTDATYPAGFMD 292
+ I+ QR + VDGKVRTD TYPAGFMD
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMD 104
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 0.49
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 214 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 80
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 228 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 100
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -3
Query: 138 LWGPVEGRGAYTPPSLSNIHALGAFKR 58
L G G G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 134 HKLRECL-PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDATY 274
H CL PL++ +RN L + + +LKI +R +++ K+R Y
Sbjct: 545 HLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIY 592
>08_02_0803 + 21390525-21391066,21391799-21391958
Length = 233
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 204 LPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 97
LP Y+S RR S + RSL + R A +PP
Sbjct: 24 LPSRPYISDMRRSAFSDRLLRSLRSEISSRRAPSPP 59
>01_01_0848 + 6614403-6614768
Length = 121
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 84 CWTSWAACTRRGPRR 128
CW S AA RR PRR
Sbjct: 4 CWASVAAALRRAPRR 18
>04_04_0416 +
25042937-25043350,25044038-25044238,25044343-25044525,
25044975-25045084,25045317-25045376,25045620-25045911,
25046780-25046967,25047275-25048149,25048846-25049805,
25050025-25050068,25050860-25050925,25051176-25051364
Length = 1193
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 279 AGYVASVRTFPSTLMRRCFTILST 208
A +V + R++PS L RCF T
Sbjct: 112 ADFVDAARSYPSALASRCFAFCPT 135
>02_05_0432 + 28936293-28936796,28937382-28939250
Length = 790
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 210 TSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLSNIHAL 73
+ LPV AY+ R +G+ +SL E + PP++++ H +
Sbjct: 366 SDLPVQAYVCRMEAYARTGEPMKSLDMFKEMKDKNIPPNVASYHKI 411
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 11 TRVLFNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPH 136
TR L ++ G KKH R + K W D+ YA + H
Sbjct: 120 TRALGDLT-GIKKHYSRKHGEKKWKCDRCSKKYAVQSDWKAH 160
>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
Length = 409
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 38 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLREC 151
G KKH R + K W ++ G YA H ++ C
Sbjct: 110 GIKKHFSRKHGEKRWRCERCGKRYAVHSDWKAH-VKNC 146
>09_04_0097 -
14573499-14574110,14574977-14575017,14575424-14575616,
14575697-14575837,14575970-14576197,14576297-14576552,
14576866-14577069,14577157-14577245,14577346-14577416,
14577498-14577579,14577653-14577715,14578018-14578155
Length = 705
Score = 25.4 bits (53), Expect = 8.0
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -3
Query: 291 SINPAGYVASVRTFPSTLMRRCFTILSTSLPV-SAYLSRFRRKITSGKHSRSLWGPVEGR 115
SI PA + R FPS F+ + P+ + L+ R+ S + R LW P+ +
Sbjct: 28 SIFPAIFTPLGRAFPSL-----FSEWNAPKPMHESLLNEALRRTISNEQKRELWSPLPYQ 82
Query: 114 GAYTPPSLSNIHAL 73
G S++H +
Sbjct: 83 GWKPCLKSSSVHGV 96
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 38 GPKKHLKRLNAPKAWMLDKLGGVYA 112
G KKH R + K W D+ G YA
Sbjct: 150 GIKKHFCRKHGEKKWKCDRCGKRYA 174
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 38 GPKKHLKRLNAPKAWMLDKLGGVYA 112
G KKH R + K W DK YA
Sbjct: 137 GIKKHFSRKHGEKKWKCDKCSKRYA 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,524,533
Number of Sequences: 37544
Number of extensions: 157086
Number of successful extensions: 517
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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