Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_E23
(293 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 132 3e-32
M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical pr... 29 0.58
M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical pr... 29 0.58
Z75526-6|CAD21698.1| 145|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical p... 25 7.1
Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical p... 25 7.1
U55370-4|AAK82906.1| 179|Caenorhabditis elegans Taf (tbp-associ... 25 7.1
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 25 7.1
AC006833-9|AAF60943.1| 318|Caenorhabditis elegans Saposin-like ... 25 7.1
Z70270-8|CAA94229.2| 358|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z48585-4|CAA88480.1| 476|Caenorhabditis elegans Hypothetical pr... 25 9.4
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 132 bits (320), Expect = 3e-32
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = +2
Query: 35 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 214
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 215 KIVKQRLIKVDGKVRTDATYPAGFMD 292
KI+ QR+++VDGKVRT +P GFMD
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMD 87
>M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical
protein ZK370.3b protein.
Length = 921
Score = 29.1 bits (62), Expect = 0.58
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -2
Query: 253 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 161
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical
protein ZK370.3a protein.
Length = 927
Score = 29.1 bits (62), Expect = 0.58
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -2
Query: 253 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 161
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>Z75526-6|CAD21698.1| 145|Caenorhabditis elegans Hypothetical
protein C06H2.6 protein.
Length = 145
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 210 TSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPPS 94
T+ A LS + G H SL P++G PPS
Sbjct: 95 TNTNTGAMLSLREKLFPIGSHMMSLCPPIDGDALLPPPS 133
>Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical
protein R74.1 protein.
Length = 1186
Score = 25.4 bits (53), Expect = 7.1
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +2
Query: 2 VFGTRVLFNMARGPKKHLKRLNA-PKAWMLDKLG-GVYAPRPSTGPHKLRECLPLVIFLR 175
+ G+++L P +R+ A P + D G GV PS P L
Sbjct: 353 IAGSKILGAPLSAPLAKYERVYALPMLTIKDDKGTGVVTSVPSDSPDDFAALSDLKKKKP 412
Query: 176 NRLKYALTGNEVLKIVKQRLIKVDG 250
R KY LT VL +IK++G
Sbjct: 413 LREKYGLTDEMVLPFEPVPIIKIEG 437
>Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical
protein R74.1 protein.
Length = 1186
Score = 25.4 bits (53), Expect = 7.1
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +2
Query: 2 VFGTRVLFNMARGPKKHLKRLNA-PKAWMLDKLG-GVYAPRPSTGPHKLRECLPLVIFLR 175
+ G+++L P +R+ A P + D G GV PS P L
Sbjct: 353 IAGSKILGAPLSAPLAKYERVYALPMLTIKDDKGTGVVTSVPSDSPDDFAALSDLKKKKP 412
Query: 176 NRLKYALTGNEVLKIVKQRLIKVDG 250
R KY LT VL +IK++G
Sbjct: 413 LREKYGLTDEMVLPFEPVPIIKIEG 437
>U55370-4|AAK82906.1| 179|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 10,
isoform b protein.
Length = 179
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 107 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDATY 274
Y RP+ P P V LR+ L LTGN+ + V++ L V D T+
Sbjct: 26 YFQRPAAAPQVYSTLEPSVQNLRSSLHKPLTGNQ-QQFVQKTLENVQKNPSQDDTH 80
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 134 HKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDATY 274
H+ +C + LKY E +I+K+R+ K+ K + + Y
Sbjct: 167 HQKAQCRDITAITEKLLKYQKDDPEKRRILKERMEKLIRKYKDETFY 213
>AC006833-9|AAF60943.1| 318|Caenorhabditis elegans Saposin-like
protein family protein7 protein.
Length = 318
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 258 RTFPSTLMRRCFTILSTSLPVSAY 187
R PS +CF + TSLP Y
Sbjct: 78 RVLPSVFKEQCFAFVETSLPEIYY 101
>Z70270-8|CAA94229.2| 358|Caenorhabditis elegans Hypothetical
protein C53D6.7 protein.
Length = 358
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 277 RVRGVSPHFPVHFDETLLHNLKHLI 203
RVR HF ++ + L+ N KH +
Sbjct: 174 RVRCFEQHFEIYVEHKLIANFKHYV 198
>Z48585-4|CAA88480.1| 476|Caenorhabditis elegans Hypothetical
protein ZK673.4 protein.
Length = 476
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 289 HKSRRVRGVSPHFPVHFDE 233
H+++RV+ P F HFDE
Sbjct: 344 HEAKRVKLEEPEFEEHFDE 362
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,632,072
Number of Sequences: 27780
Number of extensions: 115702
Number of successful extensions: 339
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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