Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E23
         (293 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   5.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    20   7.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   7.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   9.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   9.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 38  GPKKHLKRLNAP 73
           GPK+HL+ L  P
Sbjct: 336 GPKEHLRSLGIP 347


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 179 RLKYALTGNEVLKIVKQRLIKVD--GKVR 259
           R K+ LTG   L   K RL+  +  G VR
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVR 210


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 117  RGAYTPPSLSN 85
            RG YTPP  +N
Sbjct: 994  RGRYTPPQPAN 1004


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 250 PVHFDETLLHNLKHL 206
           P  F + L+HN+K L
Sbjct: 70  PTGFRKVLVHNVKEL 84


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 285 NPAGYVASVRTFPSTLMRRCFTILSTSLPVSAYLS 181
           NP     ++ +FP  L+ R   +    L VS+ +S
Sbjct: 87  NPTPQSITLISFPGELLMRLLKMFILPLIVSSLIS 121


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 101 GVYAPRPSTGPHKLRECLPL 160
           G+   +P  GP + R+ LP+
Sbjct: 64  GIPFAKPPIGPLRFRKPLPI 83


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 101 GVYAPRPSTGPHKLRECLPL 160
           G+   +P  GP + R+ LP+
Sbjct: 64  GIPFAKPPIGPLRFRKPLPI 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,012
Number of Sequences: 438
Number of extensions: 1346
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)