Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_E22
(322 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 27 0.93
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 0.93
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 25 2.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 2.8
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 3.8
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 24 5.0
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 24 6.6
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 24 6.6
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 23 8.7
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 23 8.7
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2... 23 8.7
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 0.93
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +3
Query: 159 MANTKTKGNATNSTSV*TASPPPRFAPTDLCSILPSGKSTSVTSPSTLT 305
++++ T + T+S T++PPP T S + S ++T+VT+ + +T
Sbjct: 170 ISSSSTYNSTTSSYHNSTSTPPPTITSTK-ASTVTSTEATTVTTTTAVT 217
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 0.93
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 180 GNATNSTSV*TASPPPRFAPTDLCSILPSGKSTSVTSPSTLTADTG 317
GN ++++S+ PPPR + P G+S P TG
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 2.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 192 NSTSV*TASPPPRFAPTDLCSILPSGKSTSV 284
NS T +PPP +APT + S L + T V
Sbjct: 172 NSMPPSTPTPPPVWAPTIVSSALGTSSKTPV 202
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 2.8
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +3
Query: 162 ANTKTKGNATNSTSV*TASPPPRFAPTDLCSILPSGKSTSVTSPSTLTADT 314
+++ + + T+++S ++S +PT S + S S+S + STL++ +
Sbjct: 275 SSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSS 325
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 24.6 bits (51), Expect = 3.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 149 PNKDGQYEDERQCDKFYECLDGVATTKICPDGLVFDPTIRK 271
P Y D+ ++ E + G T +C ++FD TIR+
Sbjct: 488 PTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRE 528
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 24.2 bits (50), Expect = 5.0
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 150 RTKMANTKTKGNATNSTSV*TASPPPRFAPTDLCSILPSGKSTSVTSPSTL 302
RT + + N T+S + A+P P P +L S+ + S +PS+L
Sbjct: 499 RTSVNRLVDRYNHTSSLNKVAAAPAPVPKPVNLKSVENPQNNISAPTPSSL 549
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 23.8 bits (49), Expect = 6.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 98 FIVLTAVAALASAQFKCPNKDGQYEDERQCDK 193
F+V A AA A + + P + E+E + D+
Sbjct: 273 FVVAAAPAAAAGGEAEAPAAEAAAEEEEESDE 304
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 23.8 bits (49), Expect = 6.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 162 ANTKTKGNATNSTSV*TASPPPRFAPTDLCSILPSGKSTSVTSPSTLTAD 311
AN+ GNA ++ S + PPP P+ +I S S PS + AD
Sbjct: 172 ANSSPSGNAGSNASASMSVPPP-LTPS-ASTINDQPFSNSFDLPSQVIAD 219
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 23.4 bits (48), Expect = 8.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 198 TSV*TASPPPRFAPTDLCSILPSGKSTSVTSPSTLTADTGL 320
T V +SP PRF + SI ++ LT D GL
Sbjct: 654 TMVIPSSPMPRFRAINFESITVESNLSTQCGSGVLTDDDGL 694
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 23.4 bits (48), Expect = 8.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 170 EDERQCDKFYECLDGVATTKICPDGLVFDPTIRKINKCDQP 292
EDE + D++ E +DG A+ I D + D K P
Sbjct: 133 EDEWESDEYEEVVDGSASHPIEEDSVSTDFQNHDYEKSSDP 173
>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 23.4 bits (48), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 210 TASPPPRFAPTDLCSILPSGKSTSVTSPSTL 302
T PP+ P D+ + L + +T+VT T+
Sbjct: 328 TPPHPPKIMPDDISASLANKGATAVTIKDTI 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,018,619
Number of Sequences: 5004
Number of extensions: 15667
Number of successful extensions: 55
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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