Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E22
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0336 + 19671500-19672150,19672681-19673301                       29   1.1  
11_04_0195 - 14725553-14725571,14725988-14726079,14727214-147273...    27   2.5  
05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320           27   3.3  
09_04_0457 - 17736158-17737336                                         26   5.7  
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146...    26   5.7  
10_08_0566 + 18831063-18832586                                         26   7.6  
08_02_1299 - 25968499-25968904,25969000-25969156,25969731-25970118     26   7.6  
01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229     26   7.6  

>06_03_0336 + 19671500-19672150,19672681-19673301
          Length = 423

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 212 GVATTKICPDGLVFDPTIRKINKCDQPFNVDC 307
           G A   +C + +V   T+R++  C   F+VDC
Sbjct: 144 GGALCAVCLEDVVAGETVRRLPSCGHLFHVDC 175


>11_04_0195 -
           14725553-14725571,14725988-14726079,14727214-14727335,
           14727588-14727597,14727798-14727896,14728046-14728612
          Length = 302

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 195 STSV*TASPPPRFAPTDLCSILPS 266
           ++SV  A PPPR  P DL S++ S
Sbjct: 167 ASSVYHAPPPPRSTPMDLLSVMQS 190


>05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320
          Length = 251

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 321 SVLCPQSTLKGWSHLLIFLMVGSNTSPSG 235
           ++L P+S++ G+  LL  L+VG+NT   G
Sbjct: 162 TILDPRSSVPGFGPLLTGLIVGANTIAGG 190


>09_04_0457 - 17736158-17737336
          Length = 392

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 191 KFYECLDGVATTKICPDGLVFDPTIRKINKCDQPFNVDC 307
           K ++ + G     +C      D T+R + KC   F+ DC
Sbjct: 114 KAHKSVKGALECAVCISEFDDDETLRLLPKCSHVFHQDC 152


>02_01_0224 -
           1461924-1462227,1462602-1462798,1463059-1463213,
           1464101-1464207,1464289-1464375,1465332-1465414,
           1465959-1466027,1466332-1466658,1466744-1466957,
           1467170-1467267,1467516-1467554,1467672-1468160
          Length = 722

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 216 SPPPRFAPTDLCSILPSGKSTSVTSPSTLTA 308
           +PPP   P DL S LP   ++S  S S   A
Sbjct: 33  TPPPPPPPPDLISYLPPPSTSSYPSSSAAAA 63


>10_08_0566 + 18831063-18832586
          Length = 507

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 179 RQCDKFYECLDGVATTKICPDGLVFDPTIRKINKCDQP 292
           R+ D+F++ LD +    + PD   ++  +  + K D+P
Sbjct: 301 RKLDQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDKP 338


>08_02_1299 - 25968499-25968904,25969000-25969156,25969731-25970118
          Length = 316

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 104 VLTAVAALASAQFKCPNKDGQYEDE-RQCDKFYEC 205
           +L  VA L +A+ +  +KDG  ++E + CDK +EC
Sbjct: 15  LLLLVALLVAAEGR-RHKDGSGDEEAKACDKGWEC 48


>01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229
          Length = 841

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 150 RTKMANTKTKGNATNSTSV*TASPPPRFAPTDLCSILPSGKSTSVTSPS 296
           R ++A+ +   N  N       + PPR  P  LC  +PS +   ++  S
Sbjct: 121 RPRLAHPEHSRNTFNPNK----TTPPRLRPPTLCKRIPSSQGEEISQQS 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,115,514
Number of Sequences: 37544
Number of extensions: 115311
Number of successful extensions: 410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)