Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E21
         (152 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099001-2|AAC68735.1|  168|Caenorhabditis elegans Hypothetical ...    27   1.8  
L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z92830-12|CAE17777.1|  191|Caenorhabditis elegans Hypothetical p...    25   9.6  

>AF099001-2|AAC68735.1|  168|Caenorhabditis elegans Hypothetical
           protein R160.4 protein.
          Length = 168

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 48  YLIILLVKSTFFFVIFKYIIR 110
           YLI+LL+ S FF ++F  +IR
Sbjct: 8   YLILLLIWSIFFIILFITLIR 28


>L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical
           protein F42H10.9 protein.
          Length = 309

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 33  KTKR*YLIIL---LVKSTFFFVIFKYIIRLRQSFLL 131
           K +R Y   L   L+ S FFF++F +  ++  SFLL
Sbjct: 12  KERRIYFCFLFEHLLLSAFFFILFPFPCQVGTSFLL 47


>Z92830-12|CAE17777.1|  191|Caenorhabditis elegans Hypothetical
           protein F11A5.15 protein.
          Length = 191

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 36  TKR*YLIILLVKSTFFFVIFKYII 107
           +KR  + IL++ + FFF+I  Y+I
Sbjct: 8   SKRKSIYILIISNIFFFIIPLYLI 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,512
Number of Sequences: 27780
Number of extensions: 27693
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)