Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E21
         (152 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   1.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   5.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   7.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 75  TFFFVIFKYIIRL 113
           +FF VIF YII L
Sbjct: 412 SFFIVIFTYIIIL 424


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 100 YLNMTKKKVDLTNKIIRY 47
           YL++ ++    T+KIIR+
Sbjct: 371 YLDVIERNSGATDKIIRW 388


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 100 YLNMTKKKVDLTNKIIRY 47
           YL++ ++    T+KIIR+
Sbjct: 371 YLDVIERNSGATDKIIRW 388


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 100 YLNMTKKKVDLTNKIIRY 47
           YL++ ++    T+KIIR+
Sbjct: 371 YLDVIERNSGATDKIIRW 388


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +3

Query: 51  LIILLVKSTFFFVIFKYIIR 110
           +++  + S  F++I +Y+ R
Sbjct: 336 IVLGAIGSIVFYIISRYVFR 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,170
Number of Sequences: 438
Number of extensions: 350
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)