Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_E20
(293 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 110 2e-25
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 110 2e-25
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 109 4e-25
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 0.86
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 27 2.6
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 27 3.5
09_02_0568 + 10748227-10748434,10749004-10749398 26 4.6
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 26 4.6
02_05_0952 + 33022742-33023125 26 4.6
07_01_0373 + 2783596-2784933 25 8.0
05_05_0263 - 23673014-23673697,23673772-23674188 25 8.0
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 25 8.0
01_06_0454 - 29506637-29508175 25 8.0
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 110 bits (265), Expect = 2e-25
Identities = 54/73 (73%), Positives = 61/73 (83%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
VDPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 255 RSFRKFRLIAEDV 293
+++RK RL AEDV
Sbjct: 79 QAYRKIRLRAEDV 91
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 110 bits (264), Expect = 2e-25
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
VDPF +KDWYD+KAPS+F R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 255 RSFRKFRLIAEDV 293
+++RK RL AEDV
Sbjct: 79 QAYRKIRLRAEDV 91
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 109 bits (262), Expect = 4e-25
Identities = 52/73 (71%), Positives = 63/73 (86%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
VDPF++KDWYD+KAP++F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 255 RSFRKFRLIAEDV 293
+++RK RL AEDV
Sbjct: 79 QAYRKVRLRAEDV 91
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 0.86
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 100 GTMLKRRPCSPRDKWAPPLSIAP 168
G + R PC PRDK+ P S+ P
Sbjct: 206 GAYIVRLPCGPRDKYLPKESLWP 228
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 147 TTLVNRTQGTKIASEGLKGRVFEV 218
TT+VN + K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 255 FPHHYQPGDQQGRPQKHAPLDPQMQFLFPG 166
+P+ P D P++H PLD +Q + G
Sbjct: 386 YPYVSNPEDPNHEPRQHEPLDSDVQVIDEG 415
>09_02_0568 + 10748227-10748434,10749004-10749398
Length = 200
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 103 TMLKRRPCSPRDKWAPPLSIAPREQK 180
T+ KR+P RDK P++ AP +K
Sbjct: 163 TVAKRKPLQGRDKVGIPITPAPSNEK 188
>05_07_0329 - 29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 156 VNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
+ QG KI+++GL+ + +L L+ D D +R
Sbjct: 991 IRAAQGVKISAQGLEHAIAGTALYVLKPDDDLDR 1024
>02_05_0952 + 33022742-33023125
Length = 127
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 215 LKNTPL*TLRCNFCSLGAIDKGGAHLSLGEH-GRR 114
++ P T RC +G + KG HLS+ GRR
Sbjct: 56 IERGPQLTCRCRRRFMGGVGKGAPHLSMARRKGRR 90
>07_01_0373 + 2783596-2784933
Length = 445
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 249 HHYQPGDQQGRPQKHAPLD-PQMQFLF 172
HH Q QQ + APLD P + FLF
Sbjct: 385 HHQQQQQQQQLQRLSAPLDAPNIPFLF 411
>05_05_0263 - 23673014-23673697,23673772-23674188
Length = 366
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 121 PCSPRDKWAPPLSIAPRE 174
PCS KW PP + A E
Sbjct: 323 PCSDNGKWLPPAAAAAAE 340
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 164 AIDKGGAHLSLGEHG-RRFNIVPVFTGERINNLLLNTLLA 48
A+D GG S GE G RR N++P N L + LA
Sbjct: 127 AVDGGGELSSAGEGGQRRVNLLPTKILSAYENHLFSQALA 166
>01_06_0454 - 29506637-29508175
Length = 512
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 146 AHLSLGEHGRRFNIVPVFTGERINNLLLNTLLASFR 39
AH G G RF + V G+R+ +L + A R
Sbjct: 21 AHRLCGAGGDRFEVAVVEAGDRVGGRILTSEFAGHR 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,691,420
Number of Sequences: 37544
Number of extensions: 150599
Number of successful extensions: 382
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -