Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E20
         (293 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   0.59 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   5.5  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   7.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              19   9.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 0.59
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 120 SMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAE 287
           S     + G  L+     TK++S+G+ G   E + +++      E ++R F  I E
Sbjct: 355 SFVLNNRAGRFLILTESDTKLSSQGILGEDVE-NNSEVSKSRTKESAWRHFAAIIE 409


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 122 HVHQETSGHHPCQSHP 169
           H HQ    HHP Q HP
Sbjct: 317 HPHQ----HHPSQYHP 328


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = -3

Query: 252 PHHYQPGDQQGRPQKHAPLDPQMQ 181
           PH      Q   PQ  A   PQ Q
Sbjct: 810 PHQQLHHHQSTHPQAQAQAQPQQQ 833


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 240 DSDAERSFRKFRLIAEDV 293
           D  +++  R++RL AED+
Sbjct: 167 DLTSDKLLRQYRLRAEDI 184


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 145 APPLSIAPREQKLH 186
           +P ++I PR +K H
Sbjct: 36  SPVITIEPRRRKFH 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,839
Number of Sequences: 438
Number of extensions: 1492
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)