Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E19
         (283 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   101   6e-23
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   100   3e-22
08_01_0200 + 1632883-1633913,1634620-1634677                           26   5.2  
10_08_1016 - 22262760-22264331                                         25   6.8  
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458...    25   9.0  
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961...    25   9.0  
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773...    25   9.0  
02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270     25   9.0  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  101 bits (243), Expect = 6e-23
 Identities = 47/74 (63%), Positives = 56/74 (75%)
 Frame = +1

Query: 61  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDVT 240
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 241 CQVAYSRIEGDHIV 282
            Q+ Y+ I GD ++
Sbjct: 60  AQIVYATIAGDIVM 73


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score = 99.5 bits (237), Expect = 3e-22
 Identities = 46/74 (62%), Positives = 55/74 (74%)
 Frame = +1

Query: 61  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDVT 240
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 241 CQVAYSRIEGDHIV 282
            Q+ Y+ I GD ++
Sbjct: 60  AQIVYATIAGDIVM 73


>08_01_0200 + 1632883-1633913,1634620-1634677
          Length = 362

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 211 SVGTLECCICFYP-GQRG 161
           +VG  + CICFYP GQ G
Sbjct: 33  TVGGYDWCICFYPEGQGG 50


>10_08_1016 - 22262760-22264331
          Length = 523

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 226 WIKVQSVGTLECCIC 182
           ++  Q+VGT+ CCIC
Sbjct: 15  FVPTQTVGTVLCCIC 29


>10_08_0429 +
           17845303-17845431,17845508-17845684,17845782-17845895,
           17846386-17846520,17847659-17847790,17847919-17848071,
           17848574-17848709,17849338-17849443,17849538-17849730,
           17849803-17849963,17850227-17850442,17850732-17850997,
           17851505-17851779,17851871-17852327,17853973-17854055,
           17854260-17854469,17854897-17855373,17855462-17855743,
           17855910-17856236,17856418-17856507,17856788-17856899,
           17857004-17857104,17857524-17857568
          Length = 1458

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -1

Query: 271 HPQCVSMQLDR*HLYWIKVQSVG---TLECCI 185
           HP  +S  L    +Y  +VQS G   T +CC+
Sbjct: 506 HPNALSYDLSIQGMYTYQVQSTGATITADCCV 537


>09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,
            9614416-9614501,9615519-9615678,9616122-9617438,
            9619463-9620428,9621452-9621766
          Length = 1199

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 79   KNKQYFKRYQVKFKRRREG 135
            +NK+ FK  +VKFK+ R G
Sbjct: 1039 ENKRVFKNIKVKFKQGRTG 1057


>08_02_1410 -
           26876243-26876497,26877129-26877239,26877240-26877324,
           26877620-26877672,26878318-26878440,26878514-26878597,
           26878708-26878773,26879512-26879584,26879854-26879888,
           26879970-26880212
          Length = 375

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 184 KYNTPKYRLIVLLSNKDVTCQVAYSRI--EGDHI 279
           +YNT +YR +  +S K V C+ +   +  E DH+
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHV 307


>02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270
          Length = 248

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 193 CCICFYPGQRGVC 155
           CC CF PG+R  C
Sbjct: 218 CCCCFGPGERLSC 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,256,228
Number of Sequences: 37544
Number of extensions: 121490
Number of successful extensions: 231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)