Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_E19
(283 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 144 5e-35
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 142 2e-34
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 142 2e-34
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 142 2e-34
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 142 2e-34
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 142 2e-34
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 142 2e-34
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 142 2e-34
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 39 0.003
X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein. 28 4.8
D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 prot... 28 4.8
AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein. 27 8.4
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 144 bits (349), Expect = 5e-35
Identities = 63/79 (79%), Positives = 74/79 (93%)
Frame = +1
Query: 46 IF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVLLS 225
+F +MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IV ++
Sbjct: 4 LFRRMGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVT 63
Query: 226 NKDVTCQVAYSRIEGDHIV 282
N+D+ CQ+AY+RIEGD IV
Sbjct: 64 NRDIICQIAYARIEGDMIV 82
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 142 bits (343), Expect = 2e-34
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IV ++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIV 282
CQ+AY+RIEGD IV
Sbjct: 61 ICQIAYARIEGDMIV 75
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 142 bits (343), Expect = 2e-34
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IV ++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIV 282
CQ+AY+RIEGD IV
Sbjct: 61 ICQIAYARIEGDMIV 75
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 142 bits (343), Expect = 2e-34
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IV ++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIV 282
CQ+AY+RIEGD IV
Sbjct: 61 ICQIAYARIEGDMIV 75
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 142 bits (343), Expect = 2e-34
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IV ++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIV 282
CQ+AY+RIEGD IV
Sbjct: 61 ICQIAYARIEGDMIV 75
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 142 bits (343), Expect = 2e-34
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IV ++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIV 282
CQ+AY+RIEGD IV
Sbjct: 61 ICQIAYARIEGDMIV 75
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 142 bits (343), Expect = 2e-34
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IV ++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIV 282
CQ+AY+RIEGD IV
Sbjct: 61 ICQIAYARIEGDMIV 75
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 142 bits (343), Expect = 2e-34
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +1
Query: 58 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDV 237
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IV ++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 238 TCQVAYSRIEGDHIV 282
CQ+AY+RIEGD IV
Sbjct: 61 ICQIAYARIEGDMIV 75
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/25 (60%), Positives = 22/25 (88%)
Frame = +1
Query: 208 LIVLLSNKDVTCQVAYSRIEGDHIV 282
+IV ++N+D+ CQ+AY+RIEGD IV
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIV 25
>X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.
Length = 3259
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 136 KTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDVTCQVAYSRIEGDH 276
+TD A + L + + N + ++I LLS K+ QVA + + H
Sbjct: 2360 ETDLQASRELTSRLHEEINMKEQKIISLLSGKEEAIQVAIAELRQQH 2406
>D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 protein.
Length = 3225
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 136 KTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDVTCQVAYSRIEGDH 276
+TD A + L + + N + ++I LLS K+ QVA + + H
Sbjct: 2326 ETDLQASRELTSRLHEEINMKEQKIISLLSGKEEAIQVAIAELRQQH 2372
>AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.
Length = 4169
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +1
Query: 55 KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKD 234
K F+ + KNK K+ ++ +R + +KR ++K K YRL L K
Sbjct: 4099 KRVFLAIQKNKPISKKEMIQRSKRIYEQLPEVQKKR--EEEKRKSEYKSYRLRAQLYKKR 4156
Query: 235 VTCQVAYSRIEGD 273
VT Q+ ++ D
Sbjct: 4157 VTNQLLGRKVPWD 4169
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,596,913
Number of Sequences: 237096
Number of extensions: 734905
Number of successful extensions: 5827
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5827
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1386033866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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