Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E19
         (283 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   133   2e-32
AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical ...    29   0.51 
AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    29   0.51 
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    26   4.8  
U41025-2|AAM51507.2|  356|Caenorhabditis elegans Hypothetical pr...    26   4.8  
U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical pr...    26   4.8  
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    25   8.4  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    25   8.4  
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    25   8.4  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  133 bits (322), Expect = 2e-32
 Identities = 60/75 (80%), Positives = 67/75 (89%)
 Frame = +1

Query: 58  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDV 237
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIV ++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 238 TCQVAYSRIEGDHIV 282
             Q+AYS+IEGD +V
Sbjct: 61  VAQLAYSKIEGDVVV 75


>AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical
           protein Y67H2A.2a protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 37  ISGIF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYY 150
           I  IF K+G V+  K +Q  +R+Q+KF   RE +T Y+
Sbjct: 405 IYSIFYKLGKVEE-KERQIIERFQIKF-HEREDRTRYF 440


>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 178 KNKYNTPKYRLIVLLSNKDVTCQVAYSRIEG 270
           K+K  TP YRL+++L + D+T  V  S I G
Sbjct: 187 KSKSRTPTYRLMLILGSLDLTGLVISSLIPG 217


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 79   KNKQYFKRYQVKFKRRREGKTDYYARKR 162
            KN+Q  K YQ++ +  R+ K D  A  R
Sbjct: 1646 KNQQIIKEYQIECEEARQAKEDIAALLR 1673


>U41025-2|AAM51507.2|  356|Caenorhabditis elegans Hypothetical
           protein C01C4.3a protein.
          Length = 356

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 55  KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARK 159
           + GF+K+ ++KQ  +R  +KF  R + K   + R+
Sbjct: 23  RFGFIKLAEHKQSKQRIAIKFFPRPQTKQADFVRE 57


>U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical
           protein C01C4.3b protein.
          Length = 407

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 55  KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARK 159
           + GF+K+ ++KQ  +R  +KF  R + K   + R+
Sbjct: 136 RFGFIKLAEHKQSKQRIAIKFFPRPQTKQADFVRE 170


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 136  KTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDVT 240
            + D Y+R   +V+DKN+    K+R I     K  T
Sbjct: 1132 RQDDYSRVEHIVKDKNRGANLKFRFIESSEEKQTT 1166


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 136  KTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDVT 240
            + D Y+R   +V+DKN+    K+R I     K  T
Sbjct: 5978 RQDDYSRVEHIVKDKNRGANLKFRFIESSEEKQTT 6012


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 130 EGKTDYYARKRLVVQDKNKYNTPKYRLIVLLSNKDVT 240
           +G T  Y +++L V DK         ++ LLS +DV+
Sbjct: 191 KGCTVNYKKRKLFVTDKKPLEVAMDDVLALLSGRDVS 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,563,878
Number of Sequences: 27780
Number of extensions: 119075
Number of successful extensions: 280
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)