Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E16
         (173 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0925 - 24398851-24398998,24399478-24399718,24399886-244005...    25   8.6  

>12_02_0925 -
           24398851-24398998,24399478-24399718,24399886-24400536,
           24400625-24400828,24400902-24401583,24401678-24401934,
           24402010-24402704,24403150-24403397
          Length = 1041

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 84  VMANNDNFAQDITTDNQLNGNSEHGGGDG 170
           V   ++NF +D+    +  G  EHGGG G
Sbjct: 194 VSRQDENFRRDV---EERGGTYEHGGGSG 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,349,312
Number of Sequences: 37544
Number of extensions: 55840
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)