Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E14
         (236 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1113 - 26165074-26165889,26166077-26166202,26166294-261664...    26   4.9  
06_01_0498 + 3570543-3571136,3579620-3580348                           26   4.9  
08_01_0103 + 740321-740464,740703-740759                               25   8.6  

>12_02_1113 -
           26165074-26165889,26166077-26166202,26166294-26166457,
           26166539-26166576,26166670-26166885,26166984-26167145,
           26167212-26167497,26167585-26167761,26167864-26167971,
           26168076-26168175,26168283-26168359,26168608-26168803,
           26169032-26169363,26169476-26169589,26169651-26169753
          Length = 1004

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 17  QHSTPQHTARSGTASRHYVPSLLIIS 94
           QH TP +  R   A+RH +  L + S
Sbjct: 88  QHDTPDYIRRGAAAARHRIAPLELFS 113


>06_01_0498 + 3570543-3571136,3579620-3580348
          Length = 440

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 47  SGTASRHYVPSLLIIS 94
           S TA+RHY PS+LI++
Sbjct: 84  STTAARHYPPSMLILA 99


>08_01_0103 + 740321-740464,740703-740759
          Length = 66

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 52 SRASCVLRCAVLLP 11
          SRA C++R AVLLP
Sbjct: 52 SRAQCMMRIAVLLP 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,109,458
Number of Sequences: 37544
Number of extensions: 70277
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)