Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E14
         (236 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily a...    25   9.5  

>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
           protein F45E4.4 protein.
          Length = 2361

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 20  HSTPQHTARSGTASRH 67
           H TP H+A++ T SRH
Sbjct: 215 HPTPPHSAKTDTGSRH 230


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 79  RGYIVTRRGSRASCVLRCAVLLPRA 5
           RGY++  RG  A C  +C    P A
Sbjct: 433 RGYLMVERGGEAQCEPQCPWYAPCA 457


>U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical
           protein F43C9.3 protein.
          Length = 798

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 179 FKSEIFTFLNSAAAFLQVINY 117
           FKS+  +F++S+ AFL + N+
Sbjct: 225 FKSQTSSFMSSSVAFLSMCNH 245


>AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 40 protein.
          Length = 714

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 73  YIVTRRGSRASCVLRCAVLLPRAE 2
           Y++  R     CVL C +LLP++E
Sbjct: 213 YLINHR--HVYCVLHCRLLLPKSE 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,324,307
Number of Sequences: 27780
Number of extensions: 60381
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)