Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E13
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389     28   1.2  
01_02_0084 + 10963076-10963570,10963888-10964845,10964846-109649...    27   2.1  
09_02_0523 + 10196272-10196375,10196551-10197488,10200247-102008...    26   4.9  
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594           26   4.9  
01_01_0624 - 4696314-4696608,4696704-4697394,4699525-4699540,469...    26   4.9  
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572...    25   6.5  
12_01_0062 + 530180-532398,533123-533213,533398-533613                 25   8.6  
03_02_0364 - 7813681-7814154                                           25   8.6  
02_02_0135 + 7096911-7098440                                           25   8.6  

>03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389
          Length = 711

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 130 WYVMVRSVLCVGSRWFLFTYAFTTHCWANAGN 35
           WY++   +  VG+ W+L +    + CW  A N
Sbjct: 262 WYMLASHI--VGASWYLLSIERVSDCWKKACN 291


>01_02_0084 +
           10963076-10963570,10963888-10964845,10964846-10964931,
           10965187-10965211,10965544-10965644
          Length = 554

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 127 YVMVRSVLCVGSRWFLFTYAFTTHCWANAGNRDDS 23
           Y+M+ S+   GS+W    YAFT       G+R ++
Sbjct: 475 YIMLASIYAAGSKW--GEYAFTRRSLRGIGSRKEA 507


>09_02_0523 +
           10196272-10196375,10196551-10197488,10200247-10200896,
           10201003-10201746
          Length = 811

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 77  EQEPARPDAEHGPDHHVPGSVCPQRV 154
           EQ+ ARPD E  P  H  G  C  +V
Sbjct: 78  EQQEARPDDERAPKDHT-GCECKPKV 102


>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
          Length = 622

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 172 LPSTAGHTLRTHATWYVMVRSVLCV 98
           +P +   TL  H  WY ++  VLC+
Sbjct: 352 VPDSVAPTLLPHWLWYALMAPVLCL 376


>01_01_0624 -
           4696314-4696608,4696704-4697394,4699525-4699540,
           4699577-4699630,4699741-4699809
          Length = 374

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 89  ARPDAEHGPDHHVPGSV 139
           ARPD  HGP  +V G+V
Sbjct: 113 ARPDGSHGPWSYVEGAV 129


>04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,
            5724297-5724558,5724662-5724960,5725040-5725453,
            5725533-5725899,5726002-5726146,5726562-5727558
          Length = 1015

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -3

Query: 177  HVYRAQRGTRCGHTLPGT*WSGPCSASGRAGSCSRT 70
            H +R   GT      PGT W GP   S   G  S T
Sbjct: 909  HRHRQDAGT--SSQPPGTSWQGPTGTSSEHGWASAT 942


>12_01_0062 + 530180-532398,533123-533213,533398-533613
          Length = 841

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 160 AGHTLRTHATWYV-MVRSVLCVGSRWFLFTYAFTTHCWANA-GNRD 29
           AG+ L +H+   + + RS++C+G R   FTY+     +  A G RD
Sbjct: 369 AGYGLFSHSEDAMRLFRSLVCIGERPDEFTYSAVLSAFQEAHGARD 414


>03_02_0364 - 7813681-7814154
          Length = 157

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
 Frame = +2

Query: 59  GREGVREQEPARPDA---EHGPD 118
           GR   RE+EPA  DA   +HG D
Sbjct: 104 GRSAAREEEPAATDASQEKHGDD 126


>02_02_0135 + 7096911-7098440
          Length = 509

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 144 GHTLPGT*WSGPCSASGRAGSCSRTPS 64
           GH  PG   +G CS S R  SC+ + S
Sbjct: 128 GHGQPGDMAAGWCSTSARKPSCNWSSS 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,795,062
Number of Sequences: 37544
Number of extensions: 70697
Number of successful extensions: 221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)