Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E13
         (179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82060-1|CAB04881.2|  448|Caenorhabditis elegans Hypothetical pr...    28   0.76 
Z49968-1|CAA90258.2|  499|Caenorhabditis elegans Hypothetical pr...    27   2.3  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U13070-6|AAC46643.1|  470|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical ...    25   5.4  
U23178-5|AAN63417.1|  439|Caenorhabditis elegans Vh1 dual-specif...    25   7.1  
U23178-4|AAK68300.1|  606|Caenorhabditis elegans Vh1 dual-specif...    25   7.1  
U23178-3|AAK68299.1|  657|Caenorhabditis elegans Vh1 dual-specif...    25   7.1  
AY585194-1|AAS91377.1|  657|Caenorhabditis elegans VH1-like phos...    25   7.1  

>Z82060-1|CAB04881.2|  448|Caenorhabditis elegans Hypothetical
           protein T27F6.1 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 145 RTHATW-YVMVRSVLCVGSRWFLFTY-AFTTHCWANAGN 35
           R+H  W ++++ ++LC    WFL+ Y  +  H W+   N
Sbjct: 3   RSHYFWSFILLVALLCT-LNWFLYNYQVYRNHYWSYTQN 40


>Z49968-1|CAA90258.2|  499|Caenorhabditis elegans Hypothetical
           protein M110.1 protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 168 RAQRGTRCGHTLPGT*WSGPCSASGRAGSCSRTPS 64
           + +RG+R     PG    GP  + GR GSC+   S
Sbjct: 240 QGERGSRGARGPPGP--PGPAGSDGRKGSCAHCQS 272


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 92  RPDA--EHGPDHHVPGSVCPQRVPRCAR 169
           RP A  +H P +++ G+ C    P CAR
Sbjct: 627 RPSASLQHSPPYNIFGNDCETGAPACAR 654


>U13070-6|AAC46643.1|  470|Caenorhabditis elegans Hypothetical
           protein F01F1.9 protein.
          Length = 470

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +3

Query: 21  YESSRFPAFAQQWVVKAYVNKNQRDPTQSTDRTITYQVA 137
           +E +  PAF    VVK  VN NQR  T ST      QVA
Sbjct: 356 HEENHRPAFHGGVVVK--VNVNQRYATTSTTHAALKQVA 392


>AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical
           protein T23B12.4 protein.
          Length = 799

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 47  ERWEPRRLVVQLV 9
           +RW PRR+VVQL+
Sbjct: 161 QRWAPRRVVVQLM 173


>U23178-5|AAN63417.1|  439|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform c
           protein.
          Length = 439

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 116 DHHVPGSVCPQRVPRCAR*TC 178
           D++ P  +CP +VP+ A   C
Sbjct: 180 DYYGPSDLCPPKVPKSASSNC 200


>U23178-4|AAK68300.1|  606|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform b
           protein.
          Length = 606

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 116 DHHVPGSVCPQRVPRCAR*TC 178
           D++ P  +CP +VP+ A   C
Sbjct: 284 DYYGPSDLCPPKVPKSASSNC 304


>U23178-3|AAK68299.1|  657|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform a
           protein.
          Length = 657

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 116 DHHVPGSVCPQRVPRCAR*TC 178
           D++ P  +CP +VP+ A   C
Sbjct: 335 DYYGPSDLCPPKVPKSASSNC 355


>AY585194-1|AAS91377.1|  657|Caenorhabditis elegans VH1-like
           phosphatase 1 protein.
          Length = 657

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 116 DHHVPGSVCPQRVPRCAR*TC 178
           D++ P  +CP +VP+ A   C
Sbjct: 335 DYYGPSDLCPPKVPKSASSNC 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,815,105
Number of Sequences: 27780
Number of extensions: 56219
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)