Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_E09
(184 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 60 5e-11
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 56 8e-10
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 28 0.19
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 25 1.00
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 25 1.7
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 23 5.3
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 23 7.0
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 23 7.0
SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy... 23 7.0
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 23 7.0
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 23 7.0
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 22 9.3
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 22 9.3
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 22 9.3
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 22 9.3
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 22 9.3
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 59.7 bits (138), Expect = 5e-11
Identities = 24/30 (80%), Positives = 29/30 (96%)
Frame = +3
Query: 3 DKHLIPSSQTGESKVFYYKMKGDYHRYLAD 92
+KHLIP++ TGESKVFYYKMKGDY+RYLA+
Sbjct: 106 EKHLIPAATTGESKVFYYKMKGDYYRYLAE 135
Score = 40.3 bits (90), Expect = 3e-05
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +2
Query: 92 FATGNDRKEAAENSLVAYKAASDIAMTELRP 184
F G KEAA++SL AYKAASDIA+ EL P
Sbjct: 136 FTVGEVCKEAADSSLEAYKAASDIAVAELPP 166
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 55.6 bits (128), Expect = 8e-10
Identities = 22/30 (73%), Positives = 28/30 (93%)
Frame = +3
Query: 3 DKHLIPSSQTGESKVFYYKMKGDYHRYLAD 92
+KHLIP++ + ESKVFYYKMKGDY+RYLA+
Sbjct: 107 EKHLIPNAASAESKVFYYKMKGDYYRYLAE 136
Score = 37.1 bits (82), Expect = 3e-04
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +2
Query: 92 FATGNDRKEAAENSLVAYKAASDIAMTELRP 184
FA G R+ +A+ SL YKAAS+IA EL P
Sbjct: 137 FAVGEKRQHSADQSLEGYKAASEIATAELAP 167
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 0.19
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 179 AVRSWRCLRLPCTRPASSRQPPCGRC 102
A+ RC R ++ RQ PCGRC
Sbjct: 336 AISRSRCSRCKKSKKGCDRQRPCGRC 361
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 1.00
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 150 ALYATSEFSAASLRSLPVANP-PGIGGSRPSFCS 52
A YA S + + +S ++N PG+ G RP+F S
Sbjct: 125 AYYANSYYPSYYAQSQAISNNRPGVSGFRPAFNS 158
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 24.6 bits (51), Expect = 1.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 176 VRSWRCLRLPCTRPASSRQPPCGRC 102
+R+ CLR + RQ PC RC
Sbjct: 13 IRARSCLRCRRRKVKCDRQYPCSRC 37
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 12 LIPSSQTGESKVFYYKMKGDYHRYL 86
++ SS +K FY KM G+Y L
Sbjct: 45 ILESSGVNLTKAFYQKMLGNYPEVL 69
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 22.6 bits (46), Expect = 7.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -3
Query: 143 TRPASSRQPPCGRCPSRIRQVSVVVA-LH 60
+RP S+ C C +R+R V VA LH
Sbjct: 460 SRPDSTSHASCTYCVARLRSVCNFVAFLH 488
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 22.6 bits (46), Expect = 7.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 45 VFYYKMKGDYHRYLAD 92
VF+ K DY+RY+ D
Sbjct: 2160 VFFQNCKLDYYRYVGD 2175
>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 133
Score = 22.6 bits (46), Expect = 7.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 134 ASSRQPPCGRCPSRIRQVSVVVALHFVVED 45
A R PCG C IR+ S + ++ +D
Sbjct: 82 AKGRVTPCGICRQVIREFSKDINVYMFHDD 111
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 22.6 bits (46), Expect = 7.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 83 PGGFATGNDRKEAAENSLVAYKAASDIAMTEL 178
P GF+TGN K A N VA S+ A T++
Sbjct: 32 PDGFSTGNGGKGA--NQAVAVARLSNPADTKV 61
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 22.6 bits (46), Expect = 7.0
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -3
Query: 176 VRSWRCLRLPCTRPASSRQPPCGRCPSRIRQVSVVVALHFVVED 45
VRS +P T S++QPP PS V V ED
Sbjct: 99 VRSNYASNVPSTPSDSTQQPPTNTLPSVSASSQSVETCETVDED 142
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 130 LAGRVQGSLRHRHDR 174
L+ RV+ RHRHDR
Sbjct: 879 LSVRVKHKRRHRHDR 893
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 49 KTFDSPVCELGMR 11
K FDSP LGMR
Sbjct: 511 KVFDSPTGSLGMR 523
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 108 SLPVANPPGIGGSRPSF 58
S+P A PPG G +PSF
Sbjct: 454 SIPSA-PPGFGYQQPSF 469
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -2
Query: 168 MAMSEAALYATSEFSAASLRSLPVANPPGIG 76
+ + AA+ A + F ++PV PG+G
Sbjct: 102 LVTATAAISALASFCMGLFANMPVGMAPGMG 132
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -3
Query: 170 SWRCLRLPCTRPASSRQPPCGRCP 99
S+R +R+ + + PCG CP
Sbjct: 254 SYRAIRVNNENIDAFTESPCGNCP 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 733,510
Number of Sequences: 5004
Number of extensions: 10082
Number of successful extensions: 36
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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