Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E06
         (203 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    32   0.009
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   0.45 
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   3.2  
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    23   5.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    22   9.7  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    22   9.7  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    22   9.7  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 32.3 bits (70), Expect = 0.009
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +1

Query: 139 MNTEKLKKLQSQVRIGGKGTP 201
           M+  KL KLQ+  RIGGKGTP
Sbjct: 1   MDPSKLAKLQAGARIGGKGTP 21


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +2

Query: 59  ACVNN*IISLKSAARVCRE 115
           A VN  I SLKSAA+VC E
Sbjct: 637 ATVNQRITSLKSAAKVCSE 655


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 179 RTCDCSFFSFSVFIMLF*CVKILDRHAQHFSVILF 75
           R    +FF  S+F  ++ C + L+  +  FS+I F
Sbjct: 62  RNISNTFFKKSIFFFVYYCKQALEFISTVFSIIKF 96


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 187 RRCAPATVVSLAFPYSLC 134
           R C P+T+   AFP S+C
Sbjct: 166 RDCFPSTLNYYAFPKSVC 183


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 1    FRHRQNTCVRSSYMENSCDRVC 66
            F+ +   CV  S M  SCD  C
Sbjct: 1956 FQSKSPECVIISTMNRSCDSKC 1977


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 133 YFNVLKFSTDTRSTFQ*YYLVINTR 59
           Y  V KF +  + TFQ  +L +NTR
Sbjct: 140 YEQVKKFVSVDQPTFQWGWLCVNTR 164


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit
          Ssb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 73 VINTRDHTSFPCNLIVR 23
          +INT D +SFP N I++
Sbjct: 12 IINTSDASSFPPNPILQ 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,615
Number of Sequences: 5004
Number of extensions: 11533
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)