Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E06
         (203 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    31   0.11 
Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 15/21 (71%), Positives = 18/21 (85%), Gaps = 3/21 (14%)
 Frame = +1

Query: 148 EKLKKLQSQ---VRIGGKGTP 201
           E++KKLQ+Q   VRIGGKGTP
Sbjct: 8   ERIKKLQAQQEHVRIGGKGTP 28


>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 199 VYPYRRCAPATVVSLAFPYSLCYFNVLKFS 110
           VY Y+   P    +L FP   C++ ++KF+
Sbjct: 41  VYVYKTNRPKEEKALLFPIINCFYKIMKFT 70


>Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical
           protein F21C3.2 protein.
          Length = 813

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 10  RQNTCVRSSYMENSCDRVC**LNNITEKCCACLSRIL 120
           R+  C+++ +M  +C R C    N  +    C +RI+
Sbjct: 766 RRGECLKNKWMPENCRRSCNTCVNQQQLAARCATRIV 802


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,504,521
Number of Sequences: 27780
Number of extensions: 68344
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)