Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E06
         (203 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   1.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   4.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   4.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.8  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 82  YYLVINTRDHT 50
           YYLV+   DHT
Sbjct: 290 YYLVLENTDHT 300


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 202 SVYPYRRCAPATVVSLAFPYSLCYFNVLKFST 107
           S +P R      +  + FP    +FN+  +ST
Sbjct: 406 SKFPTRSKRIDVISRIFFPIVFAFFNLAYWST 437


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 202 SVYPYRRCAPATVVSLAFPYSLCYFNVLKFST 107
           S +P R      +  + FP    +FN+  +ST
Sbjct: 406 SKFPTRSKRIDVISRIFFPIVFAFFNLAYWST 437


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 21  VRTI--KLHGKLV*SRVLITK 77
           V+T+  KLHG  +  R+L TK
Sbjct: 150 VKTVAKKLHGTDIEMRILKTK 170


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 21  VRTI--KLHGKLV*SRVLITK 77
           V+T+  KLHG  +  R+L TK
Sbjct: 150 VKTVAKKLHGTDIEMRILKTK 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,126
Number of Sequences: 438
Number of extensions: 940
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2785926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)