Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E05
         (177 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0785 - 31985455-31988463                                         27   1.6  
05_05_0210 - 23285241-23285338,23286297-23286447,23286660-232867...    27   2.8  

>01_06_0785 - 31985455-31988463
          Length = 1002

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 42  LLFGNPSLVI*FLDKYFIDESTVTYSVNSTDLQKWKRGW 158
           +++ NPS +  F D      S  +  V ST  +K KR W
Sbjct: 109 IVYNNPSFISTFSDPCQGSSSATSTGVRSTQKEKHKRQW 147


>05_05_0210 -
           23285241-23285338,23286297-23286447,23286660-23286748,
           23287108-23288394,23288460-23288516,23289446-23289644,
           23290240-23290342,23291048-23291229,23291850-23291899,
           23292192-23292360
          Length = 794

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 84  KYFIDESTVTYSVNSTDLQKWKRGWSWNYG 173
           K F+D  TVTYS + T        WSW +G
Sbjct: 712 KNFLDRVTVTYSTSRT-------SWSWTHG 734


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,577,433
Number of Sequences: 37544
Number of extensions: 65238
Number of successful extensions: 169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 14,793,348
effective HSP length: 38
effective length of database: 13,366,676
effective search space used: 267333520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)