Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E05
         (177 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026210-3|AAB71286.3|  382|Caenorhabditis elegans Hypothetical ...    26   4.1  
AL032620-1|CAA21487.1|  354|Caenorhabditis elegans Hypothetical ...    25   5.4  
AL031633-10|CAA21024.1|  387|Caenorhabditis elegans Hypothetical...    25   5.4  
AF040653-4|ABS83854.1|  339|Caenorhabditis elegans Hypothetical ...    25   7.1  
U41270-1|AAA82439.2|  411|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AF026210-3|AAB71286.3|  382|Caenorhabditis elegans Hypothetical
           protein F48A11.4 protein.
          Length = 382

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 96  DESTVTYSVNSTDLQKWKRGW 158
           D  T  YS++ TDL +W   W
Sbjct: 89  DAKTKYYSIDLTDLARWHLAW 109


>AL032620-1|CAA21487.1|  354|Caenorhabditis elegans Hypothetical
           protein Y36E3A.1 protein.
          Length = 354

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 157 QPLFHFCKSVEFTLYVTVDSSIK 89
           Q LFHF K +   L +TVD +IK
Sbjct: 264 QSLFHFEKFLIHKLRITVDDAIK 286


>AL031633-10|CAA21024.1|  387|Caenorhabditis elegans Hypothetical
           protein Y39A1A.13 protein.
          Length = 387

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 95  YKIFVKELNHQAWVSKQKET 36
           YK FVK LN Q W+    ET
Sbjct: 194 YKRFVKNLNFQTWLRPVFET 213


>AF040653-4|ABS83854.1|  339|Caenorhabditis elegans Hypothetical
           protein K05F6.12 protein.
          Length = 339

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 145 HFCKSVEFTLYVTVDSSIKY 86
           HFC   E  LYV VD +++Y
Sbjct: 60  HFCIFKELYLYVEVDYALEY 79


>U41270-1|AAA82439.2|  411|Caenorhabditis elegans Hypothetical
           protein AH9.1 protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 125 IHAICNCRFVYKIFVKEL 72
           +  I +CR+ YK+FVK L
Sbjct: 6   LRRIFDCRYKYKLFVKAL 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,993,345
Number of Sequences: 27780
Number of extensions: 58612
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,740,198
effective HSP length: 39
effective length of database: 11,656,778
effective search space used: 221478782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)