Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E04
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   101   5e-23
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   101   6e-23
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    94   9e-21
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.40 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   0.93 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   2.2  
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    25   3.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   5.0  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   6.6  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   8.7  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  101 bits (242), Expect = 5e-23
 Identities = 52/110 (47%), Positives = 66/110 (60%)
 Frame = +1

Query: 100 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 279
           SK+    PES+                   ++++A  KKR+ I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 280 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQI 429
           +I L R+AR  GNYYVP E KL FVIRIRG+N + PK RK++QL RL QI
Sbjct: 70  QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQI 119


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  101 bits (241), Expect = 6e-23
 Identities = 50/103 (48%), Positives = 64/103 (62%)
 Frame = +1

Query: 121 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQ 300
           PES+                   +++SA  KKR+ I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 301 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQI 429
           AR  GNY+VP E KL FV+RIRG+N + PK RK++QL RL QI
Sbjct: 76  ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQI 118


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 93.9 bits (223), Expect = 9e-21
 Identities = 43/81 (53%), Positives = 58/81 (71%)
 Frame = +1

Query: 187 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 366
           + ++ A  K RKE FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI 
Sbjct: 37  IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96

Query: 367 GVNQVSPKVRKVLQLFRLRQI 429
           GV  + PK+RKVL+L RL +I
Sbjct: 97  GVKNMPPKIRKVLRLLRLSRI 117


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 205 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 318
           S+K+ +EI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 301  ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRL 420
            + N+G YY  G   +AFV  I GV + SP++   LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 235 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 336
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 196 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARN 309
           R  S K ++E  +R +QYV E    E+D+I + +  ++
Sbjct: 67  RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 263  ASRSVMRSDWQDRLVTVAIIMCPVKLN*HLSSVYVVSTKYHP 388
            +S+ + R DWQD +  ++I +     +  L S   ++  YHP
Sbjct: 1119 SSQKLTRDDWQDWIRRISIELLKESPSSALRSCSTLAGIYHP 1160


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 190 KRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 318
           KR  A  ++ K+  +R ++ + E   KE++ IRL  + +++ N
Sbjct: 121 KRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 204 SGTPLECDLKTASSECLPPFTVLQ 133
           S  PLE DL+   +ECL P  ++Q
Sbjct: 187 SSDPLE-DLRLTLTECLNPINIVQ 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,467
Number of Sequences: 5004
Number of extensions: 31229
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)