Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E04
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   104   2e-23
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    28   3.3  
AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81519-2|CAB04217.1|  468|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p...    27   7.5  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    27   7.5  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    27   7.5  
Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone...    26   10.0 
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe...    26   10.0 
L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  104 bits (250), Expect = 2e-23
 Identities = 49/110 (44%), Positives = 73/110 (66%)
 Frame = +1

Query: 100 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 279
           +KK+P VPE+V               Q  +   + + +K+ + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 280 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQI 429
            +RL R+A  +G++YVP E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQI
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQI 113


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/76 (19%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +1

Query: 181 ITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL-AFVI 357
           ++LK    ++KK +E      Q+VKE    E + ++   ++ N+ ++Y+   + + A  +
Sbjct: 1   MSLKVLQENLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSIDAMWL 60

Query: 358 RIRGVNQVSPKVRKVL 405
             +G  ++  ++  +L
Sbjct: 61  LTKGTMELMAEIHVML 76


>AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical
           protein F27B3.7 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +2

Query: 197 VPLPLRRGK-----KSLREPNNMSKNTASRSVMRSD 289
           +PL +RR       KS+ +P N+  NTA  ++M SD
Sbjct: 25  IPLEIRRKHNLTQLKSMIDPQNLDDNTALEAIMNSD 60


>Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK849.2c protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 179 RSHSRGVPLPLRRGKKSLREPNNMSKN 259
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 233 RGNTKGLTAPLRHNFKSLRKRNGVGKS 259


>Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK849.2b protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 179 RSHSRGVPLPLRRGKKSLREPNNMSKN 259
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 255 RGNTKGLTAPLRHNFKSLRKRNGVGKS 281


>Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical
           protein ZK849.2a protein.
          Length = 414

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 179 RSHSRGVPLPLRRGKKSLREPNNMSKN 259
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 257 RGNTKGLTAPLRHNFKSLRKRNGVGKS 283


>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
            C47E8.8 protein.
          Length = 1675

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 235  RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 366
            R +Q VKE  I++R   +LA       NY +    ++ FV+ ++
Sbjct: 1149 RMKQNVKEECIRQRFMSKLAPIIHRLDNYSIEARVRIIFVLSVK 1192


>Z81519-2|CAB04217.1|  468|Caenorhabditis elegans Hypothetical
           protein F29C12.5 protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 216 LLNGSGTPLECDLKTASSECL 154
           L+ GSG P+E  L  A  ECL
Sbjct: 240 LIEGSGKPMEIRLDIAEKECL 260


>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
            protein C47E8.8 protein.
          Length = 1675

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 235  RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 366
            R +Q VKE  I++R   +LA       NY +    ++ FV+ ++
Sbjct: 1149 RMKQNVKEECIRQRFMSKLAPIIHRLDNYSIEARVRIIFVLSVK 1192


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
            protein Y18D10A.13 protein.
          Length = 2417

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 158  HSELAVFRSHSRGVPLPLRRGKKSLREPNNMSKNTASRSVMRSDWQDR 301
            H  L  F SH+  +   ++RG  +  + N+  + +  +SVM   + +R
Sbjct: 1427 HRSLLTFTSHAIRLECDIKRGFATFSDANSSHRFSIIQSVMNQSFNNR 1474


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
            protein protein.
          Length = 2417

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 158  HSELAVFRSHSRGVPLPLRRGKKSLREPNNMSKNTASRSVMRSDWQDR 301
            H  L  F SH+  +   ++RG  +  + N+  + +  +SVM   + +R
Sbjct: 1427 HRSLLTFTSHAIRLECDIKRGFATFSDANSSHRFSIIQSVMNQSFNNR 1474


>Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical
           protein R07E5.1 protein.
          Length = 812

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
 Frame = +1

Query: 178 QITLKRRSASIKKRKEIFKRAEQYVK---EYRIKE---RDEIRLARQ 300
           Q  LK+R   +K+R+EI ++ E+  +   E  +KE   RD +R+++Q
Sbjct: 673 QEILKKREEDLKRRREIVEKKEEENRKRVEKELKELENRDLLRVSKQ 719


>U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical
           protein F41F3.8 protein.
          Length = 118

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 123 RNSWQLLTVLFTLHRFFLGRSLLFC 49
           R+ W LL ++ T+H F LG S   C
Sbjct: 2   RSLWMLLMLIGTIHAFLLGGSGCGC 26


>U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 39 protein.
          Length = 384

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 410 SCNTLRTLGDTWLTPRIRMTNASLASPGT**LPRLRACLANLISSR 273
           +C   + + DTW++    M ++SLA+ G   LP     + +L S R
Sbjct: 334 NCQFKKLIADTWMSTLKNMNDSSLATRG---LPFAAPAIHDLTSGR 376


>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
           defective protein 45 protein.
          Length = 1076

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 211 KKRKEIFKRAEQYVKEYRIKERDEI-RLARQARNRGNY 321
           K+RKEI K+ E  V  Y      EI R+ R+ +   NY
Sbjct: 552 KRRKEILKKIEGQVTSYEKNRPTEIERIHRRKKMLENY 589


>L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical
           protein F54F2.5a protein.
          Length = 582

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 196 RSASIKKRKEIFKRAEQYVKEYRIKERDEI 285
           R  + +KR+EI+K   Q V+E+R    +EI
Sbjct: 323 RLQNFRKRQEIWKTMGQMVEEHRTDVHEEI 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,568,657
Number of Sequences: 27780
Number of extensions: 185375
Number of successful extensions: 637
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)