Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E03
         (85 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    24   3.1  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    23   5.4  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    23   7.2  

>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 8   GYRHEELTNAAATIVNTTHVKVGDVV 85
           GY   +L+  AA  + T H+ + D V
Sbjct: 39  GYARSKLSQEAANKIVTAHIPIDDTV 64


>SPCC4G3.08 |psk1||serine/threonine protein kinase
          Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 8  GYRHEELTNAAATIVNTTHVKVG 76
          GY  EEL  +A+TI +++ +K G
Sbjct: 30 GYDFEELEASASTITSSSDLKDG 52


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 69  LTWVVLTMVAAAFVSSSCRY 10
           L W ++TM+   F+  S RY
Sbjct: 190 LLWGIITMIGILFLPESPRY 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 383,232
Number of Sequences: 5004
Number of extensions: 3162
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 9
effective length of database: 2,317,442
effective search space used: 41713956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)