Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E03
         (85 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175     27   2.7  
12_01_0778 + 7111562-7112152,7113034-7113157,7113252-7113395,711...    25   6.3  
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473...    25   8.4  
10_02_0146 - 5837734-5837978,5838005-5838196,5838783-5838936           25   8.4  

>10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175
          Length = 294

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 75  PTLTWVV-LTMVAAAFVSSSCRYP 7
           P LTW   L  + A F +++CRYP
Sbjct: 237 PELTWTTDLDDITATFDAAACRYP 260


>12_01_0778 +
          7111562-7112152,7113034-7113157,7113252-7113395,
          7113485-7113630,7113716-7113838,7113922-7114089,
          7114253-7114474,7114572-7114745
          Length = 563

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 1  CCRISARGADKRRSYHRQYYPRQSGGR 81
          CC     GADKRR       P   GGR
Sbjct: 4  CCVSRPSGADKRRRCGSSTAPHTRGGR 30


>12_02_0626 -
           21344530-21344986,21346132-21346469,21347300-21347338,
           21347572-21347629,21349854-21350136,21350404-21350766,
           21350768-21350840
          Length = 536

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 1   CCRISAR-GADKRRSYHRQYYPRQSGG 78
           CC+++ R G  +RRS  R+   R+ GG
Sbjct: 102 CCQMAPRRGGGERRSAQRRRLERRKGG 128


>10_02_0146 - 5837734-5837978,5838005-5838196,5838783-5838936
          Length = 196

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 85  HHVPHFDVGSIDDGSCG 35
           H   HFD+G ++DG+ G
Sbjct: 109 HGKMHFDMGGVEDGTSG 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,016
Number of Sequences: 37544
Number of extensions: 29361
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 14,793,348
effective HSP length: 9
effective length of database: 14,455,452
effective search space used: 260198136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)