Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E03
         (85 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            21   6.8  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            21   6.8  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    21   6.8  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 22   GADKRRSYHRQYYPRQSGGR 81
            G +K    +RQ + R  GGR
Sbjct: 2485 GTNKITKLYRQQFDRAQGGR 2504


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 22   GADKRRSYHRQYYPRQSGGR 81
            G +K    +RQ + R  GGR
Sbjct: 2495 GTNKITKLYRQQFDRAQGGR 2514


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 63  WVVLTMVAAAFVSSSCRYP 7
           WVV    + A V+S  RYP
Sbjct: 45  WVVDRDKSVAIVTSGVRYP 63


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,355
Number of Sequences: 2352
Number of extensions: 879
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 9
effective length of database: 542,811
effective search space used:  9770598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)