Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E03
         (85 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical p...    27   1.8  
U39666-3|AAA80410.2|  178|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>Z81122-13|CAB03356.3|  368|Caenorhabditis elegans Hypothetical
           protein T13F2.5 protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 75  PTLTWVVLTMVAAAFVSSSCR 13
           P LTW++  +VA  F S +CR
Sbjct: 71  PNLTWLLKNLVAQYFFSMACR 91


>U39666-3|AAA80410.2|  178|Caenorhabditis elegans Hypothetical
           protein K04E7.1 protein.
          Length = 178

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 84  TTSPTLTWVVLTMVAAAFVSSSCRY 10
           T+ P  TW+V+++V  A   S C +
Sbjct: 73  TSFPLNTWLVVSLVVTAVCGSMCTW 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,035
Number of Sequences: 27780
Number of extensions: 19218
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 12,740,198
effective HSP length: 9
effective length of database: 12,490,178
effective search space used: 224823204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)