Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_E02
(327 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 118 2e-28
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 118 2e-28
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 118 2e-28
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 118 2e-28
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 118 2e-28
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 70 1e-13
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 38 5e-04
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 38 5e-04
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 31 0.044
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 25 2.2
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 3.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 3.8
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 24 5.1
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 24 5.1
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 5.1
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 23 8.8
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 23 8.8
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 23 8.8
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 118 bits (285), Expect = 2e-28
Identities = 61/76 (80%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ + NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 118 bits (285), Expect = 2e-28
Identities = 61/76 (80%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ + NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 118 bits (285), Expect = 2e-28
Identities = 61/76 (80%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ + NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 118 bits (285), Expect = 2e-28
Identities = 61/76 (80%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ + NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 118 bits (285), Expect = 2e-28
Identities = 61/76 (80%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ + NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 118 bits (285), Expect = 2e-28
Identities = 61/76 (80%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ + NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 118 bits (285), Expect = 2e-28
Identities = 61/76 (80%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ + NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 118 bits (285), Expect = 2e-28
Identities = 61/76 (80%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ + NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 118 bits (285), Expect = 2e-28
Identities = 61/76 (80%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ + NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 69.7 bits (163), Expect = 1e-13
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
M I VKTLTG+ +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 227 IQKESTLHLVLRLRGGA 277
++ S LHLVL LRGG+
Sbjct: 61 LEGGSVLHLVLALRGGS 77
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 37.5 bits (83), Expect = 5e-04
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 122 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 265
+K I I ++QRLI+AG+ L+D +L Y IQ ++HLV L
Sbjct: 29 LKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 37.5 bits (83), Expect = 5e-04
Identities = 14/39 (35%), Positives = 29/39 (74%)
Frame = +2
Query: 122 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 238
+K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 27 LKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 31.1 bits (67), Expect = 0.044
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -2
Query: 206 DHLPTVYRRRSIFVDQEGCPPYLESWLS 123
DHLP+V RRRSI D G P Y + LS
Sbjct: 611 DHLPSVKRRRSIANDFHGKPDYNKRSLS 638
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 2.2
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +1
Query: 1 GLQIRHEAWCRRKVINDADFCENPYGKTITLEV 99
G + + E C + D C++PYGK + +++
Sbjct: 186 GSKQQRETICAELAGSYVDLCKSPYGKYLAIKI 218
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.6 bits (51), Expect = 3.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 236 PSGYCNQRGFDHLPTVYRRRSIFVDQEGCPPY 141
PS + RG + P+ RRR + G PY
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGFHPY 48
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.6 bits (51), Expect = 3.8
Identities = 9/39 (23%), Positives = 18/39 (46%)
Frame = -2
Query: 224 CNQRGFDHLPTVYRRRSIFVDQEGCPPYLESWLSHFDSI 108
CN++G + V R V+Q+ +W+ F+ +
Sbjct: 277 CNKKGLSYFKAVIRAFEWLVEQKLSKTRFSAWMHSFNDV 315
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 24.2 bits (50), Expect = 5.1
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -2
Query: 272 HRAGGAL-SGASTPSGYCN 219
H +GG + SGA+TP+ Y N
Sbjct: 235 HTSGGGVHSGAATPNAYVN 253
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 24.2 bits (50), Expect = 5.1
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 272 HRAGGALSGASTPSGYCNQRGFDHLPTVYRRRSIFVDQEGCPPYLESWLSHFDSIRGLTS 93
HR G + T +R D + R+R+ F++Q E L+ FDS R + +
Sbjct: 371 HRVSGLMLANHTSIASLFKRTLDQYDRL-RKRNAFLEQYKKEAIFEDDLNEFDSSRDVVA 429
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 5.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 200 DGRTLSDYNIQKESTLHLVLRLR 268
DG TL++ N HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 131 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 235
++Q++ + P+Q R+ + GKQ D + D +QK
Sbjct: 257 RVQNEVTLSPEQLRIQYVGKQ--DPKKHLDAEVQK 289
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 23.4 bits (48), Expect = 8.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 31 RRKVINDADFCENP 72
RR V+N CENP
Sbjct: 49 RRAVLNQTSLCENP 62
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 23.4 bits (48), Expect = 8.8
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -2
Query: 137 ESWLSHFDSIRGLTS 93
+S+LSH +SI+GL+S
Sbjct: 264 DSFLSHSESIKGLSS 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,238,791
Number of Sequences: 5004
Number of extensions: 23353
Number of successful extensions: 85
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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