Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_E02
         (327 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    120   2e-29
AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative 5-oxoprol...    26   0.41 
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   2.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   2.9  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  120 bits (288), Expect = 2e-29
 Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
 Frame = +2

Query: 50  MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
           MQIFVKTLTG+            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 227 IQKESTLHLVLRLRGG 274
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  120 bits (288), Expect = 2e-29
 Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
 Frame = +2

Query: 50  MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
           MQIFVKTLTG+            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 227 IQKESTLHLVLRLRGG 274
           IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score =  120 bits (288), Expect = 2e-29
 Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
 Frame = +2

Query: 50  MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
           MQIFVKTLTG+            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 227 IQKESTLHLVLRLRGG 274
           IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228


>AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative 5-oxoprolinase
            protein.
          Length = 1344

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = -2

Query: 269  RAGGALSGASTPSGYCNQRGFDHLPTVYRRRSIFVDQEGCPPYLESWLSHFDSIRGLT 96
            R GG L           Q G  HLP +     +F   E  P +  +   H   I G+T
Sbjct: 835  RRGGTLKPGDVLLSNHPQAGGSHLPDLTVITPVFAPGEALPVFFVASRGHHADIGGIT 892


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 229 DIVIREGSTIFQLFTGEDQSLLI 161
           D  ++   T+FQ+ TGED ++++
Sbjct: 652 DSFVQSLLTVFQILTGEDWNMVM 674


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 143 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 265
           K   P  Q R IF G+ +++   +    +Q++   HL++ L
Sbjct: 588 KREFPDLQNRTIFTGRFVKELYDVRSGCVQEQDGTHLLMNL 628


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 320,033
Number of Sequences: 2352
Number of extensions: 6198
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 22477884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)