Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_E02
(327 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 120 2e-28
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 120 2e-28
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 120 2e-28
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 120 2e-28
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 120 2e-28
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 76 7e-15
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 64 2e-11
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 52 1e-07
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 52 1e-07
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 44 3e-05
M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 41 2e-04
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 38 0.002
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 38 0.002
U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical pr... 33 0.037
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 31 0.15
U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical pr... 30 0.34
AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-lik... 29 0.60
U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical p... 28 1.4
U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical pr... 27 2.4
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z83105-10|CAB05484.1| 499|Caenorhabditis elegans Hypothetical p... 27 3.2
AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 27 4.2
AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical... 27 4.2
AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical... 26 5.6
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 25 9.7
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p... 25 9.7
AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical ... 25 9.7
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 25 9.7
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 25 9.7
AF000262-7|AAN60523.1| 544|Caenorhabditis elegans Hypothetical ... 25 9.7
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 25 9.7
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 118 bits (283), Expect = 1e-27
Identities = 61/76 (80%), Positives = 63/76 (82%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTL G+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456
Score = 61.7 bits (143), Expect = 1e-10
Identities = 33/47 (70%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAG 187
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAG
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 503
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 593 IQKESTLHLVLRLRGG 608
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 669 IQKESTLHLVLRLRGG 684
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 744
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 745 IQKESTLHLVLRLRGG 760
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 820
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 821 IQKESTLHLVLRLRGG 836
Score = 118 bits (283), Expect = 1e-27
Identities = 61/76 (80%), Positives = 63/76 (82%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTL G+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 593 IQKESTLHLVLRLRGG 608
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 669 IQKESTLHLVLRLRGG 684
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 744
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 745 IQKESTLHLVLRLRGG 760
Score = 119 bits (286), Expect = 6e-28
Identities = 61/76 (80%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 820
Query: 227 IQKESTLHLVLRLRGG 274
IQK+STLHLVLRLRGG
Sbjct: 821 IQKQSTLHLVLRLRGG 836
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 120 bits (289), Expect = 2e-28
Identities = 62/76 (81%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
MQIFVKTLTG+ +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 227 IQKESTLHLVLRLRGG 274
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 75.8 bits (178), Expect = 7e-15
Identities = 40/76 (52%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
M I VKTLTG+ + +K K+++KEGIPP QQRLIFAGKQ+ D +T +DY
Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYK 60
Query: 227 IQKESTLHLVLRLRGG 274
+ S LHLVL LRGG
Sbjct: 61 VLGGSVLHLVLALRGG 76
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 64.1 bits (149), Expect = 2e-11
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 226
+ + VKTL G+ P + +K K+Q+K G+PPDQQRLIF QLE+ R L YN
Sbjct: 161 LTVSVKTLFGKTIPISIKNTDTVETLKFKVQNKHGVPPDQQRLIFGRAQLENDRALFAYN 220
Query: 227 IQKESTLHLVLRLR 268
I+ E +HLV R R
Sbjct: 221 IRDEDIIHLVSRHR 234
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 197 EDGRTLSDYNIQKESTLHL 253
+D RT+SDYNI+ STL L
Sbjct: 135 KDQRTISDYNIKNGSTLRL 153
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 29 VGVR*STMQIFVKTLTGRPSP*RSTL*YYQNVKAKIQDKEGI 154
+ V TM + VKT TG+ T+ +NVK +++DK+G+
Sbjct: 52 ISVDSKTMLLSVKTSTGKTI----TVEAPKNVKTEVRDKQGV 89
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 52.0 bits (119), Expect = 1e-07
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +2
Query: 119 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 277
++K KI+ EGIP ++QRL +AG+QLED SD I E+T+++ L L GGA
Sbjct: 23 SIKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGIDSEATIYVNLELLGGA 71
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 52.0 bits (119), Expect = 1e-07
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +2
Query: 119 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 277
++K KI+ EGIP ++QRL +AG+QLED SD I E+T+++ L L GGA
Sbjct: 23 SIKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGIDSEATIYVNLELLGGA 71
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +2
Query: 119 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 262
++K I+ + IP L F+GK+LED ++ DYNIQK ST+ + R
Sbjct: 177 DIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGDYNIQKSSTITMYFR 224
>M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein (
C.elegans ubiquitin A(UbiA) gene, 5' end. ).
Length = 37
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/37 (62%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +2
Query: 50 MQIFVKTLTGRPSP*R-STL*YYQNVKAKIQDKEGIP 157
MQIFVKTLTG+ +NVKAKIQDKEGIP
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +2
Query: 122 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 274
+K +IQD+ G+P +Q+L+ G ++D + + YN+ + ++L ++ RGG
Sbjct: 602 LKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAIYLQVKERGG 652
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +2
Query: 122 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 274
+K +IQD+ G+P +Q+L+ G ++D + + YN+ + ++L ++ RGG
Sbjct: 602 LKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAIYLQVKERGG 652
>U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical
protein C16C8.13 protein.
Length = 244
Score = 33.5 bits (73), Expect = 0.037
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 116 QNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 253
+ VK I + R++ K LED TL+ YNIQ+ STL L
Sbjct: 196 RQVKLTINSLANVDISSFRMVLRDKVLEDDHTLAYYNIQEGSTLGL 241
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 116 QNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 268
+++K +I + R++ GK LED +L+ YNIQ+ + + L L+
Sbjct: 219 RHIKLRINSLAKVDISSFRMVLRGKLLEDHHSLAYYNIQEGALIWLYSHLK 269
>U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical
protein C16C8.14 protein.
Length = 233
Score = 30.3 bits (65), Expect = 0.34
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 116 QNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 247
+ +K +I GI R K LED TL+ YNI++ ST+
Sbjct: 185 RQIKPRINSLAGIDTISFRTFCDDKFLEDDHTLAHYNIREGSTI 228
>AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform b protein.
Length = 47
Score = 29.5 bits (63), Expect = 0.60
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 119 NVKAKIQDKEGIPPDQQRLIFAGK 190
++K KI+ EGIP ++QRL +A +
Sbjct: 23 SIKQKIEAAEGIPAEEQRLCYAAR 46
>U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical
protein C16C8.11 protein.
Length = 214
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +2
Query: 116 QNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 262
+ +K KI+ + GIP + L GK L D + L+DY + ++++ L++R
Sbjct: 166 EQLKMKIECQTGIPRTKFWLRLHGKPLYDDKKLADY--KWDTSVELLVR 212
>U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical
protein C16C8.5 protein.
Length = 180
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 173 LIFAGKQLEDGRTLSDYNIQKESTLHL 253
L + G++L+D R++ YNI + ++L
Sbjct: 129 LYYGGQKLQDNRSIGSYNIDQSREIYL 155
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 5 CRFGTRHGVGVR*STMQIFVKTLTGRPSP*RSTL*YYQNVK 127
CRFG G+ S + F+KT+ +P S +YQNV+
Sbjct: 3151 CRFGVSQEFGLGNSISRAFMKTVAAEKNPLISFA-WYQNVQ 3190
>Z83105-10|CAB05484.1| 499|Caenorhabditis elegans Hypothetical
protein F14H3.10 protein.
Length = 499
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 7 QIRHEAWCRRKVINDADFCENPYGKTITLEVNP 105
QI ++AW R ++ D+ YG TL + P
Sbjct: 40 QIAYQAWRRGGILPALDYYRKKYGNAYTLWLGP 72
>AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical
protein Y116A8C.16c protein.
Length = 982
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 155 GCPPYLESWLSHFDSIRGLTSRVMVFP 75
G P++++W F +I GL + +++FP
Sbjct: 816 GFIPWVDNWAHLFGTIFGLLTTIIIFP 842
>AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical
protein Y116A8C.16a protein.
Length = 727
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 155 GCPPYLESWLSHFDSIRGLTSRVMVFP 75
G P++++W F +I GL + +++FP
Sbjct: 561 GFIPWVDNWAHLFGTIFGLLTTIIIFP 587
>AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical
protein Y116A8C.14 protein.
Length = 861
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 155 GCPPYLESWLSHFDSIRGLTSRVMVFP 75
G P++++W F +I GL + ++V+P
Sbjct: 696 GLIPWIDNWSHLFGTIFGLITSIIVYP 722
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 196 GRWSNPL*LQYPEGVDAPLSAPPARW 273
GRW+ + P G P+ PP RW
Sbjct: 824 GRWTTLMTEWRPYGWKRPVGRPPMRW 849
>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
protein C28H8.3 protein.
Length = 1714
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 229 DIVIREGSTIFQLFTGEDQSLLIRRDALLIL 137
+I +REG TIF G D+ +RR+A + L
Sbjct: 672 EIAVREGRTIFDQHQGTDKQ-EVRRNAAIDL 701
>AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical
protein Y51A2D.4 protein.
Length = 606
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 266 AGGALSGASTPSGYCNQRGFDHLPTVY 186
A G A+T GYC GFD+ P VY
Sbjct: 410 ACGFCHDANTKQGYCLPAGFDN-PEVY 435
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 196 GRWSNPL*LQYPEGVDAPLSAPPARW 273
GRW+ + P G P+ PP RW
Sbjct: 999 GRWTTLMTEWRPYGWKRPVGRPPMRW 1024
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 196 GRWSNPL*LQYPEGVDAPLSAPPARW 273
GRW+ + P G P+ PP RW
Sbjct: 738 GRWTTLMTEWRPYGWKRPVGRPPMRW 763
>AF000262-7|AAN60523.1| 544|Caenorhabditis elegans Hypothetical
protein C48E7.2 protein.
Length = 544
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -3
Query: 235 LLDIVIREG---STIFQLFTGEDQSLLIRRDALLILNLGF 125
+++ +++E ST+F G+ + LIR+ ++N GF
Sbjct: 26 VMETILKESCQLSTLFYKLKGQISNTLIRKSVSTLINFGF 65
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 196 GRWSNPL*LQYPEGVDAPLSAPPARW 273
GRW+ + P G P+ PP RW
Sbjct: 350 GRWTTLMTEWRPYGWKRPVGRPPMRW 375
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,004,601
Number of Sequences: 27780
Number of extensions: 136870
Number of successful extensions: 443
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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